Mercurial > repos > timpalpant > java_genomics_toolkit
comparison galaxy-conf/BaseAlignCounts.xml @ 7:4fc118372ae7
Uploaded new version with fixes and broader support for interval files
| author | timpalpant |
|---|---|
| date | Sun, 19 Feb 2012 01:54:28 -0500 |
| parents | 422ac2bbb274 |
| children | 9266d807ca85 |
comparison
equal
deleted
inserted
replaced
| 6:422ac2bbb274 | 7:4fc118372ae7 |
|---|---|
| 1 <tool id="BaseAlignCounts" name="Map coverage" version="1.0.0"> | 1 <tool id="BaseAlignCounts" name="Map coverage" version="1.0.0"> |
| 2 <description>of sequencing reads</description> | 2 <description>of sequencing reads</description> |
| 3 <command interpreter="sh">galaxyToolRunner.sh ngs.BaseAlignCounts -i $input -a ${chromInfo} -x $X -o $output</command> | 3 <command interpreter="sh">galaxyToolRunner.sh ngs.BaseAlignCounts -i $input -a ${chromInfo} -x $X -o $output</command> |
| 4 <inputs> | 4 <inputs> |
| 5 <param name="input" type="data" format="bam" label="Sequencing reads" /> | 5 <param name="input" type="data" format="sam,bam,bed,bedgraph" label="Sequencing reads" /> |
| 6 <param name="X" type="integer" value="0" label="In silico extension (leave 0 for read length)" /> | 6 <param name="X" type="integer" value="-1" label="In silico extension (-1 for read length)" /> |
| 7 </inputs> | 7 </inputs> |
| 8 <outputs> | 8 <outputs> |
| 9 <data name="output" format="wig" /> | 9 <data name="output" format="wig" /> |
| 10 </outputs> | 10 </outputs> |
| 11 | 11 |