comparison galaxy-conf/BaseAlignCounts.xml @ 2:e16016635b2a

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2:e16016635b2a

<tool id="BaseAlignCounts" name="Map coverage" version="1.0.0">
  <description>of sequencing reads</description>
  <command>galaxyToolRunner.sh -i $input -g $dbkey -x $X -p 4 -o $output</command>
  <inputs>
    <param name="input" type="data" format="bam,sam,bed,bedgraph" label="Sequencing reads" />
    <param name="X" type="integer" value="0" label="In silico extension (leave 0 for read length)" />
  </inputs>
  <outputs>
    <data name="output" format="wig" />
  </outputs>
  
  <help>
    .. class:: warningmark
    
    This tool requires sequencing reads in SAM/BAM/Bed/BedGraph format.
    
    .. class:: warningmark
    
    This tool was contributed by Timothy Palpant.
  </help>
</tool>