comparison galaxy-conf/IntervalAverager.xml @ 13:eb53be9a09f4 draft

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12:81d5b81fb3c2

<tool id="IntervalAverager" name="Average intervals" version="1.0.0">
  <description>that have been aligned</description>
  <command interpreter="sh">galaxyToolRunner.sh visualization.IntervalAverager -i $input -l $loci -o $output</command>
  <inputs>
      <param format="wig,bigwig" name="input" type="data" label="Sequencing data" />
      <param format="bed" name="loci" type="data" label="List of intervals (with alignment points)" />
  </inputs>
  <outputs>
      <data format="tabular" name="output" />
  </outputs>

13:eb53be9a09f4

<tool id="IntervalAverager" name="Average intervals" version="1.0.0">
  <description>that have been aligned</description>
  <command interpreter="sh">
    galaxyToolRunner.sh visualization.IntervalAverager -l $loci -o $output $file1
      #for $input in $inputs
        ${input.file}
      #end for
  </command>
  <inputs>
      <param name="file1" label="Sequencing data" type="data" format="bigwig,wig" />
      <repeat name="inputs" title="Additional sequencing data">
        <param name="file" type="data" format="bigwig,wig" />
      </repeat>
      <param format="bed" name="loci" type="data" label="List of intervals (with alignment points)" />
  </inputs>
  <outputs>
      <data format="tabular" name="output" />
  </outputs>