diff galaxy-conf/GeneTrackToBedGraph.xml @ 20:9d56b5b85740 draft

Reuploaded to see if tools get loaded correctly this time.

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/galaxy-conf/GeneTrackToBedGraph.xml	Fri Jun 15 15:10:26 2012 -0400
@@ -0,0 +1,27 @@
+<tool id="GeneTrackToBedGraph" name="GeneTrack to BedGraph" version="1.1.0">
+  <description>converter</description>
+  <command interpreter="sh">galaxyToolRunner.sh converters.GeneTrackToBedGraph -i $input -o $output</command>
+  <inputs>
+      <param name="input" type="data" format="tabular" label="Input GeneTrack index" />
+  </inputs>
+  <outputs>
+      <data name="output" format="bedgraph" metadata_source="input" />
+  </outputs>
+	<tests>
+	  <test>
+	    <param name="input" value="test.genetrack" ftype="tabular"/>
+	    <output name="output" file="geneTrackToBedGraph.bedGraph"/>
+    </test>
+  </tests>
+<help>
+
+This tool will sum the counts from the forward and reverse strands in a GeneTrack_ index to create a BedGraph file.
+
+.. _GeneTrack: http://atlas.bx.psu.edu/genetrack/docs/genetrack.html
+
+.. class:: warningmark
+	
+This tool requires GeneTrack formatted data. If you have tabular data that was not correctly autodetected, change the metadata by clicking on the pencil icon for the dataset.
+
+</help>
+</tool>