Mercurial > repos > tomnl > nmrml2isa
comparison nmrml2isa-galaxy/README.md @ 0:5990ad113145 draft
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| author | tomnl |
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| date | Fri, 03 Feb 2017 11:25:37 -0500 |
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| -1:000000000000 | 0:5990ad113145 |
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| 1 nmrml2isa for galaxy | |
| 2 =============== | |
| 3 | |
| 4 [](http://bioconda.github.io/recipes/nmrml2isa/README.html) [](https://travis-ci.org/ISA-tools/nmrml2isa-galaxy) | |
| 5 | |
| 6 This is a Galaxy wrapper for the nmrml2isa python package tool. | |
| 7 | |
| 8 - Full documentation: http://2isa.readthedocs.io/en/latest/ | |
| 9 - Python PyPi package: https://pypi.python.org/pypi/mzml2isa/ | |
| 10 - Github code: https://github.com/ISA-tools/mzml2isa | |
| 11 | |
| 12 nmrml2isa is a program that allows you to convert metabolomic studies in .mzML format to the open ISA-Tab standard supported by the MetaboLights database. | |
| 13 | |
| 14 Installation | |
| 15 =============== | |
| 16 | |
| 17 The recommended installation is by means of the toolshed (https://toolshed.g2.bx.psu.edu/). Dependencies should be installed automatically when using Galaxy version >= 16.10. | |
| 18 | |
| 19 The dependencies are dealt with Bioconda. To ensure that Bioconda is working check to make sure the following settings are in the config/galaxy.ini file. | |
| 20 | |
| 21 ``` | |
| 22 # dependencies before each job runs. | |
| 23 conda_auto_install = True | |
| 24 # Set to True to instruct Galaxy to install Conda from the web automatically | |
| 25 # if it cannot find a local copy and conda_exec is not configured. | |
| 26 conda_auto_init = True | |
| 27 ``` | |
| 28 | |
| 29 | |
| 30 Licence | |
| 31 =============== | |
| 32 GNU General Public License v3 (GPLv3) |