diff nmrml2isa-galaxy/README.md @ 0:5990ad113145 draft

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+nmrml2isa for galaxy
+===============
+
+[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat-square)](http://bioconda.github.io/recipes/nmrml2isa/README.html) [![Build Status](https://travis-ci.org/ISA-tools/nmrml2isa-galaxy.svg?branch=master)](https://travis-ci.org/ISA-tools/nmrml2isa-galaxy)
+
+This is a Galaxy wrapper for the nmrml2isa python package tool.
+
+- Full documentation: http://2isa.readthedocs.io/en/latest/
+- Python PyPi package: https://pypi.python.org/pypi/mzml2isa/
+- Github code: https://github.com/ISA-tools/mzml2isa
+
+nmrml2isa is a program that allows you to convert metabolomic studies in .mzML format to the open ISA-Tab standard supported by the MetaboLights database.
+
+Installation
+===============
+
+The recommended installation is by means of the toolshed (https://toolshed.g2.bx.psu.edu/). Dependencies should be installed automatically when using Galaxy version >= 16.10. 
+
+The dependencies are dealt with Bioconda. To ensure that Bioconda is working check to make sure the following settings are in the config/galaxy.ini file.
+
+```
+# dependencies before each job runs.
+conda_auto_install = True
+# Set to True to instruct Galaxy to install Conda from the web automatically
+# if it cannot find a local copy and conda_exec is not configured.
+conda_auto_init = True
+```
+
+
+Licence
+===============
+GNU General Public License v3 (GPLv3)