comparison tmp2/docker_test.xml @ 7:2a8b693c33d9 draft

Uploaded

6:316a0be8dc9a

    <description>tail-to-head</description>
    <requirements>
      <container type="docker">triasteran/bowite0127:latest</container>
    </requirements>
    <command>
      echo "Galaxy slots passed through contain as \$GALAXY_SLOTS";
      cat $input1
      #for $q in $queries
            ${q.input2}
      #end for
      &gt; $out_file1;
      echo "Work dir output" &gt; working_file
      bowtie --version > $out_file1
      python2 --version > $out_file1
      bowtie-build --version $out_file1
    </command>
    <inputs>
        <param name="input1" type="data" label="Concatenate Dataset"/>
        <repeat name="queries" title="Dataset">
            <param name="input2" type="data" label="Select" />
        </repeat>
    </inputs>
    <outputs>
        <data name="out_file1" format="input" metadata_source="input1"/>
        <data name="out_file2" format="txt" from_work_dir="working_file" />
    </outputs>
    <help>
    </help>
</tool>

7:2a8b693c33d9

    <description>tail-to-head</description>
    <requirements>
      <container type="docker">triasteran/bowite0127:latest</container>
    </requirements>
    <command>
      echo $input1
      bowtie --version > $out_file1
      python2 --version > $out_file1
      bowtie-build --version $out_file1
    </command>
    <inputs>
        <param name="input1" type="data" label="Concatenate Dataset"/>
    </inputs>
    <outputs>
        <data name="out_file1" format="input"/>
    </outputs>
    <help>
    </help>
</tool>