Mercurial > repos > triasteran > catdc_docker_test
comparison tmp2/docker_test.xml @ 6:316a0be8dc9a draft
Uploaded
| author | triasteran |
|---|---|
| date | Tue, 08 Mar 2022 11:35:06 +0000 |
| parents | 3548e4ba820f |
| children | 2a8b693c33d9 |
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| 5:3548e4ba820f | 6:316a0be8dc9a |
|---|---|
| 1 <tool id="catdc" name="Concatenate datasets (in docker)" version="2.11"> | 1 <tool id="catdc" name="Concatenate datasets (in docker)" version="2.12"> |
| 2 <description>tail-to-head</description> | 2 <description>tail-to-head</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <container type="docker">triasteran/bowite0127:latest</container> | 4 <container type="docker">triasteran/bowite0127:latest</container> |
| 5 </requirements> | 5 </requirements> |
| 6 <command> | 6 <command> |
| 9 #for $q in $queries | 9 #for $q in $queries |
| 10 ${q.input2} | 10 ${q.input2} |
| 11 #end for | 11 #end for |
| 12 > $out_file1; | 12 > $out_file1; |
| 13 echo "Work dir output" > working_file | 13 echo "Work dir output" > working_file |
| 14 bowtie --version | 14 bowtie --version > $out_file1 |
| 15 python2 --version | 15 python2 --version > $out_file1 |
| 16 bowtie-build --version | 16 bowtie-build --version $out_file1 |
| 17 </command> | 17 </command> |
| 18 <inputs> | 18 <inputs> |
| 19 <param name="input1" type="data" label="Concatenate Dataset"/> | 19 <param name="input1" type="data" label="Concatenate Dataset"/> |
| 20 <repeat name="queries" title="Dataset"> | 20 <repeat name="queries" title="Dataset"> |
| 21 <param name="input2" type="data" label="Select" /> | 21 <param name="input2" type="data" label="Select" /> |