Mercurial > repos > triasteran > catdc_docker_test
comparison tmp2/docker_test.xml @ 5:3548e4ba820f draft
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author | triasteran |
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date | Tue, 08 Mar 2022 11:28:05 +0000 |
parents | 5c163e8176de |
children | 316a0be8dc9a |
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4:5c163e8176de | 5:3548e4ba820f |
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1 <tool id="catdc" name="Concatenate datasets (in docker)" version="2.1"> | 1 <tool id="catdc" name="Concatenate datasets (in docker)" version="2.11"> |
2 <description>tail-to-head</description> | 2 <description>tail-to-head</description> |
3 <requirements> | 3 <requirements> |
4 <container type="docker">triasteran/bowite0127:latest</container> | 4 <container type="docker">triasteran/bowite0127:latest</container> |
5 </requirements> | 5 </requirements> |
6 <command> | 6 <command> |
9 #for $q in $queries | 9 #for $q in $queries |
10 ${q.input2} | 10 ${q.input2} |
11 #end for | 11 #end for |
12 > $out_file1; | 12 > $out_file1; |
13 echo "Work dir output" > working_file | 13 echo "Work dir output" > working_file |
14 | 14 bowtie --version |
15 python2 --version | |
16 bowtie-build --version | |
15 </command> | 17 </command> |
16 <inputs> | 18 <inputs> |
17 <param name="input1" type="data" label="Concatenate Dataset"/> | 19 <param name="input1" type="data" label="Concatenate Dataset"/> |
18 <repeat name="queries" title="Dataset"> | 20 <repeat name="queries" title="Dataset"> |
19 <param name="input2" type="data" label="Select" /> | 21 <param name="input2" type="data" label="Select" /> |