Mercurial > repos > triasteran > catdc_docker_test

changeset 10:b75227b2833e draft default tip

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Uploaded
author triasteran
date Tue, 08 Mar 2022 11:44:09 +0000
parents 81f36745bc9d
children
files smalt/tool_data_table_conf.xml.sample
diffstat 1 files changed, 18 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/smalt/tool_data_table_conf.xml.sample	Tue Mar 08 11:44:09 2022 +0000
@@ -0,0 +1,18 @@
+<!-- Use the file tool_data_table_conf.xml.oldlocstyle if you don't want to update your loc files as changed in revision 4550:535d276c92bc-->
+<tables>
+    <!-- Locations of all fasta files under genome directory -->
+    <table name="all_fasta" comment_char="#">
+        <columns>value, dbkey, name, path</columns>
+        <file path="tool-data/all_fasta.loc" />
+    </table>
+    <!-- Locations of indexes in the Bowtie2 mapper format -->
+    <table name="bowtie2_indexes" comment_char="#">
+        <columns>value, dbkey, name, path</columns>
+        <file path="tool-data/bowtie2_indices.loc" />
+    </table>
+    <!-- Locations of indexes in the Bowtie2 mapper format for TopHat2 to use -->
+    <table name="tophat2_indexes" comment_char="#">
+        <columns>value, dbkey, name, path</columns>
+        <file path="tool-data/tophat2_indices.loc" />
+    </table>
+</tables>