Mercurial > repos > triasteran > ribogalaxy_genome_mapping
changeset 1:733e35b8b615 draft default tip
Uploaded
author | triasteran |
---|---|
date | Mon, 13 Feb 2023 14:48:43 +0000 |
parents | bd016d0f0746 |
children | |
files | bowtie_genome_wrapper/bowtie_genomic_wrapper.xml bowtie_genome_wrapper/tool-data/bowtie_indexes.loc.sample bowtie_genome_wrapper/tool_data_table_conf.xml.sample |
diffstat | 3 files changed, 5 insertions(+), 5 deletions(-) [+] |
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--- a/bowtie_genome_wrapper/bowtie_genomic_wrapper.xml Mon Feb 13 14:21:00 2023 +0000 +++ b/bowtie_genome_wrapper/bowtie_genomic_wrapper.xml Mon Feb 13 14:48:43 2023 +0000 @@ -1,4 +1,4 @@ -<tool id="bowtie_genomic_wrapper" name="Bowtie Genome Alignment" version="1.7.0a"> +<tool id="bowtie_genomic_wrapper" name="Bowtie Genome Alignment" version="1.7.0b"> <description>Align to the Genome with Bowtie</description> <requirements> <requirement type="package" version="1.2.0">bowtie</requirement> @@ -162,7 +162,7 @@ </param> <when value="indexed"> <param name="index" type="select" label="Select a reference genome" help="if your genome of interest is not listed - contact Galaxy team"> - <options from_data_table="bowtie_genome_refs"> + <options from_data_table="bowtie_genome_refs2"> <filter type="sort_by" column="2" /> <validator type="no_options" message="No indexes are available" /> </options>
--- a/bowtie_genome_wrapper/tool-data/bowtie_indexes.loc.sample Mon Feb 13 14:21:00 2023 +0000 +++ b/bowtie_genome_wrapper/tool-data/bowtie_indexes.loc.sample Mon Feb 13 14:48:43 2023 +0000 @@ -1,9 +1,9 @@ mus_musculus_m28 m28 Mus musculus (m28) Genome /mnt/data/indices/bowtie/genome/mus_musculus_m28/mus_musculus_m28_genome mus_musculus_m10 m10 Mus musculus (m10) Genome /mnt/data/indices/bowtie/genome/mus_musculus_m10/mus_musculus_m10_genome drosophila_melanogaster_dm6 dm6 Drosophila melanogaster (dm6) Genome /mnt/data/indices/bowtie/genome/drosophila_melanogater_dm6/drosophila_melanogater_dm6_genome -drosophila_melanogater_dm3 dm3 Drosophila melanogaster (dm3) Genome /mnt/data/indices/bowtie/genome/drosophila_melanogaster_dm3/drosophila_melanogaster_dm3_genome +drosophila_melanogater_dm3 dm3 Drosophila melanogaster (dm3) Genome /mnt/data/indices/bowtie/genome/drosophila_melanogaster_dm3/drosophila_melanogaster_dm3_genome sacCer_9 sacCer9 Saccharomyces cerevisiae (v9) Genome /mnt/data/indices/bowtie/genome/sacCer_9/sacCer_9_genome -sarCer_3 sacCer3 Saccharomyces cerevisiae (v3) Genome /mnt/data/indices/bowtie/genome/sacCer_3_gwips/sacCer_3_gwips +sarCer_3 sacCer3 Saccharomyces cerevisiae (v3) Genome /mnt/data/indices/bowtie/genome/sacCer_3_gwips/sacCer3_genome E_coli_K12_ASM584v2 e_coli_ASM584v2 Escherichia coli (K12 ASM584v2) Genome /mnt/data/indices/bowtie/genome/E_coli_gwips/ecoli_gwips_genom Arabidopsis araThal Arabidopsis thaliana (TAIR10) Genome /mnt/data/indices/bowtie/genome/Arabidopsis/Arabidopsis_genome homo_sapiens_hg19 hg19 Homo sapiens (hg19) Genome /mnt/data/indices/bowtie/genome/homo_sapiens_hg19/homo_sapiens_hg19_genome
--- a/bowtie_genome_wrapper/tool_data_table_conf.xml.sample Mon Feb 13 14:21:00 2023 +0000 +++ b/bowtie_genome_wrapper/tool_data_table_conf.xml.sample Mon Feb 13 14:48:43 2023 +0000 @@ -1,7 +1,7 @@ <!-- Use the file tool_data_table_conf.xml.oldlocstyle if you don't want to update your loc files as changed in revision 4550:535d276c92bc--> <tables> <!-- Locations of indexes in the Bowtie mapper format --> - <table name="bowtie_genome_refs" comment_char="#"> + <table name="bowtie_genome_refs2" comment_char="#"> <columns>value, dbkey, name, path</columns> <file path="tool-data/bowtie_indexes.loc" /> </table>