Mercurial > repos > triasteran > ribogalaxy_get_chrom_sizes_upd

changeset 1:f2306942d61a draft default tip

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Uploaded
author triasteran
date Tue, 14 Feb 2023 12:29:12 +0000
parents b93d6b2e561b
children
files get_chrom_sizes/get_chrom_sizes.xml get_chrom_sizes/tool-data/builtin_fastas.loc.sample get_chrom_sizes/tool_data_table_conf.xml.sample
diffstat 3 files changed, 4 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/get_chrom_sizes/get_chrom_sizes.xml	Mon Feb 13 15:49:26 2023 +0000
+++ b/get_chrom_sizes/get_chrom_sizes.xml	Tue Feb 14 12:29:12 2023 +0000
@@ -1,4 +1,4 @@
-<tool id="get_chrom_sizes" name="Get Chromosome Sizes" version="2.8.3a">
+<tool id="get_chrom_sizes" name="Get Chromosome Sizes" version="2.8.3b">
     <description>Generates a TAB Delimited chrom.sizes File from an Inputted FASTA</description>
     <requirement type="package" version="0.7.1">pyfaidx</requirement>
 
@@ -19,7 +19,7 @@
             </param>
             <when value="builtin">
                 <param name="input1_builtin" type="select" format="fasta" label="Select a reference" help="if your reference of interest is not listed - contact RiboGalaxy team">
-                    <options from_data_table="builtin_fastas_3">
+                    <options from_data_table="builtin_fastas_4">
                         <filter type="sort_by" column="2" />
                         <validator type="no_options" message="No built-ins are available" />
                     </options>
--- a/get_chrom_sizes/tool-data/builtin_fastas.loc.sample	Mon Feb 13 15:49:26 2023 +0000
+++ b/get_chrom_sizes/tool-data/builtin_fastas.loc.sample	Tue Feb 14 12:29:12 2023 +0000
@@ -1,5 +1,5 @@
 mus_musculus_m28	m28	Mus musculus (m28) Genome	/mnt/data/indices/bowtie/genome/mus_musculus_m28/mus_musculus_m28.fa
-mus_musculus_m10	m10	Mus musculus (m28) Genome	/mnt/data/indices/bowtie/genome/mus_musculus_m28/mus_musculus_m10.fa
+mus_musculus_m10	m10	Mus musculus (m10) Genome	/mnt/data/indices/bowtie/genome/mus_musculus_m10/mus_musculus_m10.fa
 drosophila_melanogaster_dm6	dm6	Drosophila melanogaster (dm6) Genome	/mnt/data/indices/bowtie/genome/drosophila_melanogater_dm6/dm6.fa
 sacCer_9	sacCer9	Saccharomyces cerevisiae (v9) Genome	/mnt/data/indices/bowtie/genome/sacCer_9/S288C_reference_sequence_R9-1-1_19990210.fsa
 sarCer_3	sacCer3	Saccharomyces cerevisiae (v3) Genome	/mnt/data/indices/bowtie/genome/sacCer_3_gwips/sacCer3_genome.fa
--- a/get_chrom_sizes/tool_data_table_conf.xml.sample	Mon Feb 13 15:49:26 2023 +0000
+++ b/get_chrom_sizes/tool_data_table_conf.xml.sample	Tue Feb 14 12:29:12 2023 +0000
@@ -1,7 +1,7 @@
 <!-- Use the file tool_data_table_conf.xml.oldlocstyle if you don't want to update your loc files as changed in revision 4550:535d276c92bc-->
 <tables>
     <!-- Locations of indexes in the Bowtie mapper format -->
-    <table name="builtin_fastas_3" comment_char="#">
+    <table name="builtin_fastas_4" comment_char="#">
         <columns>value, dbkey, name, path</columns>
         <file path="tool-data/builtin_fastas.loc" />
     </table>