comparison bowtie_transcriptome_wrapper_ALLA2/bowtie_transcriptomic_wrapper_test.xml @ 5:b6706d595db8 draft default tip

Uploaded

4:b34484a03c12

<tool id="bowtie_trans_wrapper4" name="Bowtie Transcriptome Alignment test ref version" version="1a">
  <description>Align to Transcriptome using Bowtie</description>
  <requirements>
    <requirement type="package" version="1.2.0">bowtie</requirement>
    <requirement type="package" version="1.13">samtools</requirement>

        <option value="indexed">Use a built-in index</option>
        <option value="history">Use one from the history</option>
      </param>
      <when value="indexed">
        <param name="index" type="select" label="Select a reference" help="if your reference of interest is not listed - contact RiboGalaxy team">
          <options from_data_table="bowtie_transcriptome_indexes_4">
            <filter type="sort_by" column="2" />
            <validator type="no_options" message="No indexes are available" />
          </options>
        </param>
      </when>

5:b6706d595db8

<tool id="bowtie_trans_wrapper5" name="Bowtie Transcriptome Alignment" version="1b">
  <description>Align to Transcriptome using Bowtie</description>
  <requirements>
    <requirement type="package" version="1.2.0">bowtie</requirement>
    <requirement type="package" version="1.13">samtools</requirement>

        <option value="indexed">Use a built-in index</option>
        <option value="history">Use one from the history</option>
      </param>
      <when value="indexed">
        <param name="index" type="select" label="Select a reference" help="if your reference of interest is not listed - contact RiboGalaxy team">
          <options from_data_table="bowtie_transcriptome_references">
            <filter type="sort_by" column="2" />
            <validator type="no_options" message="No indexes are available" />
          </options>
        </param>
      </when>