Mercurial > repos > triasteran > ribogalaxy_transcriptome_test_new_index
comparison bowtie_transcriptome_wrapper_ALLA2/bowtie_transcriptomic_wrapper_test.xml @ 5:b6706d595db8 draft default tip
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author | triasteran |
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date | Mon, 13 Feb 2023 10:41:02 +0000 |
parents | b34484a03c12 |
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4:b34484a03c12 | 5:b6706d595db8 |
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1 <tool id="bowtie_trans_wrapper4" name="Bowtie Transcriptome Alignment test ref version" version="1a"> | 1 <tool id="bowtie_trans_wrapper5" name="Bowtie Transcriptome Alignment" version="1b"> |
2 <description>Align to Transcriptome using Bowtie</description> | 2 <description>Align to Transcriptome using Bowtie</description> |
3 <requirements> | 3 <requirements> |
4 <requirement type="package" version="1.2.0">bowtie</requirement> | 4 <requirement type="package" version="1.2.0">bowtie</requirement> |
5 <requirement type="package" version="1.13">samtools</requirement> | 5 <requirement type="package" version="1.13">samtools</requirement> |
6 | 6 |
160 <option value="indexed">Use a built-in index</option> | 160 <option value="indexed">Use a built-in index</option> |
161 <option value="history">Use one from the history</option> | 161 <option value="history">Use one from the history</option> |
162 </param> | 162 </param> |
163 <when value="indexed"> | 163 <when value="indexed"> |
164 <param name="index" type="select" label="Select a reference" help="if your reference of interest is not listed - contact RiboGalaxy team"> | 164 <param name="index" type="select" label="Select a reference" help="if your reference of interest is not listed - contact RiboGalaxy team"> |
165 <options from_data_table="bowtie_transcriptome_indexes_4"> | 165 <options from_data_table="bowtie_transcriptome_references"> |
166 <filter type="sort_by" column="2" /> | 166 <filter type="sort_by" column="2" /> |
167 <validator type="no_options" message="No indexes are available" /> | 167 <validator type="no_options" message="No indexes are available" /> |
168 </options> | 168 </options> |
169 </param> | 169 </param> |
170 </when> | 170 </when> |