# HG changeset patch
# User triasteran
# Date 1655710043 0
# Node ID 6958515efa76aaef3ca8670feac6cce9aae81bda
# Parent  5d0d5933d370d19251ca12aaa0f13c0f919fe22d
Uploaded

diff -r 5d0d5933d370 -r 6958515efa76 UMI_riboseq_processing/UMI.py
--- a/UMI_riboseq_processing/UMI.py	Sun Jun 19 12:44:06 2022 +0000
+++ b/UMI_riboseq_processing/UMI.py	Mon Jun 20 07:27:23 2022 +0000
@@ -20,7 +20,7 @@
             sep = lines[2]
             qual = lines[3]
             trimmed_seq = seq[2:-5]+"\n" # fooprint + barcode
-            UMI = seq[0:2]+seq[-5:] #7nt in total; 5'NN and last 3'NNNNN  
+            UMI = seq[0:2]+seq[-5:].strip('\n') #7nt in total; 5'NN and last 3'NNNNN  
             split_header = header.split(" ")
             new_header = split_header[0]+"_"+UMI+" "+split_header[1]
             if qual[-1:] == "\n":
diff -r 5d0d5933d370 -r 6958515efa76 UMI_riboseq_processing/UMI_riboseq.xml
--- a/UMI_riboseq_processing/UMI_riboseq.xml	Sun Jun 19 12:44:06 2022 +0000
+++ b/UMI_riboseq_processing/UMI_riboseq.xml	Mon Jun 20 07:27:23 2022 +0000
@@ -1,4 +1,4 @@
-<tool id="UMI_riboseq" name="move UMIs from reads and keep barcodes" version="0.1.1">
+<tool id="UMI_riboseq" name="move UMIs from reads to header" version="0.1.2">
 <requirements>
 </requirements>
 <command detect_errors="exit_code">
@@ -23,4 +23,4 @@
 <citation type="bibtex"> @misc{FedorovaAD2022, author = {Fedorova Alla}, year = {2022}, title = {UMI_for_riboseq}, publisher = {GitHub}, journal = {GitHub repository}, url = {https://github.com/triasteran/RiboGalaxy_with_ansible/blob/main/toolshed_tools/UMI_riboseq_tool/UMI.py}, }
 </citation>
 </citations>
-</tool>
\ No newline at end of file
+</tool>