annotate test-data/slncky/reads.simPE.filtered_info.txt.sorted @ 0:a940c4a36a43 draft default tip

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author trinity_ctat
date Tue, 17 Jul 2018 11:49:16 -0400
parents
children
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trinity_ctat
parents:
diff changeset
1 STRG.10.1 aligns to STRG.43.1 with 89.5% identity and 99.3% coverage. Appears to be duplication.
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trinity_ctat
parents:
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2 STRG.10.1 aligns to STRG.7.1 with 90.1% identity and 98.9% coverage. Appears to be duplication.
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trinity_ctat
parents:
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3 STRG.11.1 transcript entirely within coding transcript NM_173666
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trinity_ctat
parents:
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4 STRG.1.1 aligns to STRG.46.1 with 98.5% identity and 99.9% coverage. Appears to be duplication.
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trinity_ctat
parents:
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5 STRG.12.1 transcript entirely within coding transcript uc011dmq.2
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trinity_ctat
parents:
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6 STRG.13.1 100.0% exonic overlap with coding transcript NM_005345
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trinity_ctat
parents:
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7 STRG.14.1 100.0% exonic overlap with coding transcript uc003nxk.2
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trinity_ctat
parents:
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8 STRG.15.2 aligns to STRG.22.1 with 99.4% identity and 100.0% coverage. Appears to be duplication.
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trinity_ctat
parents:
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9 STRG.15.2 aligns to STRG.6.1 with 97.0% identity and 100.0% coverage. Appears to be duplication.
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trinity_ctat
parents:
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10 STRG.16.1 100.0% exonic overlap with coding transcript NM_001003806
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trinity_ctat
parents:
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11 STRG.17.1 aligns to mm9 coding transcript NM_133900 with 65.4% exonic identity
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trinity_ctat
parents:
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12 STRG.17.1 aligns to mm9 coding transcript uc008zth.2 with 65.4% exonic identity
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trinity_ctat
parents:
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13 STRG.18.1 100.0% exonic overlap with coding transcript uc003tzi.4
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trinity_ctat
parents:
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14 STRG.19.1 200.0% exonic overlap with coding transcript uc003ubx.4
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trinity_ctat
parents:
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15 STRG.20.1 99.8% exonic overlap with coding transcript NM_198085
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trinity_ctat
parents:
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16 STRG.21.1 transcript entirely within coding transcript NM_001164750
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trinity_ctat
parents:
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17 STRG.21.2 transcript entirely within coding transcript uc011leg.2
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trinity_ctat
parents:
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18 STRG.2.1 aligns to STRG.47.1 with 98.6% identity and 99.9% coverage. Appears to be duplication.
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trinity_ctat
parents:
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19 STRG.22.1 aligns to STRG.15.2 with 99.4% identity and 100.0% coverage. Appears to be duplication.
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trinity_ctat
parents:
diff changeset
20 STRG.22.1 aligns to STRG.6.1 with 97.1% identity and 100.0% coverage. Appears to be duplication.
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trinity_ctat
parents:
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21 STRG.24.1 32.7% exonic overlap with coding transcript uc001ocx.3
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trinity_ctat
parents:
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22 STRG.26.1 100.0% exonic overlap with coding transcript uc001oiw.2
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trinity_ctat
parents:
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23 STRG.27.1 100.0% exonic overlap with coding transcript uc001oja.3
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trinity_ctat
parents:
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24 STRG.29.1 100.0% exonic overlap with coding transcript NM_001014449
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trinity_ctat
parents:
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25 STRG.30.1 37.4% exonic overlap with coding transcript uc002fnn.2
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trinity_ctat
parents:
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26 STRG.31.1 transcript entirely within coding transcript NM_000978
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trinity_ctat
parents:
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27 STRG.31.2 transcript entirely within coding transcript uc002hqx.1
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trinity_ctat
parents:
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28 STRG.31.3 71.4% exonic overlap with coding transcript uc002hqy.1
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trinity_ctat
parents:
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29 STRG.3.1 aligns to STRG.48.1 with 98.2% identity and 99.9% coverage. Appears to be duplication.
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trinity_ctat
parents:
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30 STRG.32.1 40.2% exonic overlap with coding transcript uc002hrq.1
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trinity_ctat
parents:
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31 STRG.33.1 97.7% exonic overlap with coding transcript NM_198993
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trinity_ctat
parents:
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32 STRG.34.1 35.7% exonic overlap with coding transcript uc002hsq.3
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trinity_ctat
parents:
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33 STRG.35.1 transcript entirely within coding transcript NM_001075099
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trinity_ctat
parents:
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34 STRG.36.1 20.8% exonic overlap with coding transcript uc002iyw.4
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trinity_ctat
parents:
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35 STRG.37.1 99.8% exonic overlap with coding transcript uc002klr.3
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trinity_ctat
parents:
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36 STRG.38.1 transcript entirely within coding transcript NM_001003652
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trinity_ctat
parents:
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37 STRG.39.1 32.6% exonic overlap with coding transcript NM_004152
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trinity_ctat
parents:
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38 STRG.40.1 88.6% exonic overlap with coding transcript NM_002967
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trinity_ctat
parents:
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39 STRG.41.1 99.6% exonic overlap with coding transcript NM_014649
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trinity_ctat
parents:
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40 STRG.43.1 aligns to STRG.10.1 with 89.5% identity and 99.3% coverage. Appears to be duplication.
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trinity_ctat
parents:
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41 STRG.43.1 aligns to STRG.7.1 with 90.7% identity and 100.0% coverage. Appears to be duplication.
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trinity_ctat
parents:
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42 STRG.46.1 aligns to STRG.1.1 with 98.5% identity and 99.9% coverage. Appears to be duplication.
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trinity_ctat
parents:
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43 STRG.47.1 aligns to STRG.2.1 with 98.6% identity and 99.9% coverage. Appears to be duplication.
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trinity_ctat
parents:
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44 STRG.48.1 aligns to STRG.3.1 with 98.2% identity and 99.9% coverage. Appears to be duplication.
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trinity_ctat
parents:
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45 STRG.6.1 aligns to STRG.15.2 with 97.0% identity and 100.0% coverage. Appears to be duplication.
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trinity_ctat
parents:
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46 STRG.6.1 aligns to STRG.22.1 with 97.1% identity and 100.0% coverage. Appears to be duplication.
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trinity_ctat
parents:
diff changeset
47 STRG.7.1 aligns to STRG.10.1 with 90.1% identity and 98.9% coverage. Appears to be duplication.
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trinity_ctat
parents:
diff changeset
48 STRG.7.1 aligns to STRG.43.1 with 90.7% identity and 100.0% coverage. Appears to be duplication.
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trinity_ctat
parents:
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49 STRG.9.1 transcript entirely within coding transcript NM_020357