Mercurial > repos > trinity_ctat > ctat_lncrna
diff test-data/slncky/reads.simPE.filtered_info.txt.sorted @ 0:a940c4a36a43 draft default tip
Upload ctat tools.
author | trinity_ctat |
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date | Tue, 17 Jul 2018 11:49:16 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/slncky/reads.simPE.filtered_info.txt.sorted Tue Jul 17 11:49:16 2018 -0400 @@ -0,0 +1,49 @@ +STRG.10.1 aligns to STRG.43.1 with 89.5% identity and 99.3% coverage. Appears to be duplication. +STRG.10.1 aligns to STRG.7.1 with 90.1% identity and 98.9% coverage. Appears to be duplication. +STRG.11.1 transcript entirely within coding transcript NM_173666 +STRG.1.1 aligns to STRG.46.1 with 98.5% identity and 99.9% coverage. Appears to be duplication. +STRG.12.1 transcript entirely within coding transcript uc011dmq.2 +STRG.13.1 100.0% exonic overlap with coding transcript NM_005345 +STRG.14.1 100.0% exonic overlap with coding transcript uc003nxk.2 +STRG.15.2 aligns to STRG.22.1 with 99.4% identity and 100.0% coverage. Appears to be duplication. +STRG.15.2 aligns to STRG.6.1 with 97.0% identity and 100.0% coverage. Appears to be duplication. +STRG.16.1 100.0% exonic overlap with coding transcript NM_001003806 +STRG.17.1 aligns to mm9 coding transcript NM_133900 with 65.4% exonic identity +STRG.17.1 aligns to mm9 coding transcript uc008zth.2 with 65.4% exonic identity +STRG.18.1 100.0% exonic overlap with coding transcript uc003tzi.4 +STRG.19.1 200.0% exonic overlap with coding transcript uc003ubx.4 +STRG.20.1 99.8% exonic overlap with coding transcript NM_198085 +STRG.21.1 transcript entirely within coding transcript NM_001164750 +STRG.21.2 transcript entirely within coding transcript uc011leg.2 +STRG.2.1 aligns to STRG.47.1 with 98.6% identity and 99.9% coverage. Appears to be duplication. +STRG.22.1 aligns to STRG.15.2 with 99.4% identity and 100.0% coverage. Appears to be duplication. +STRG.22.1 aligns to STRG.6.1 with 97.1% identity and 100.0% coverage. Appears to be duplication. +STRG.24.1 32.7% exonic overlap with coding transcript uc001ocx.3 +STRG.26.1 100.0% exonic overlap with coding transcript uc001oiw.2 +STRG.27.1 100.0% exonic overlap with coding transcript uc001oja.3 +STRG.29.1 100.0% exonic overlap with coding transcript NM_001014449 +STRG.30.1 37.4% exonic overlap with coding transcript uc002fnn.2 +STRG.31.1 transcript entirely within coding transcript NM_000978 +STRG.31.2 transcript entirely within coding transcript uc002hqx.1 +STRG.31.3 71.4% exonic overlap with coding transcript uc002hqy.1 +STRG.3.1 aligns to STRG.48.1 with 98.2% identity and 99.9% coverage. Appears to be duplication. +STRG.32.1 40.2% exonic overlap with coding transcript uc002hrq.1 +STRG.33.1 97.7% exonic overlap with coding transcript NM_198993 +STRG.34.1 35.7% exonic overlap with coding transcript uc002hsq.3 +STRG.35.1 transcript entirely within coding transcript NM_001075099 +STRG.36.1 20.8% exonic overlap with coding transcript uc002iyw.4 +STRG.37.1 99.8% exonic overlap with coding transcript uc002klr.3 +STRG.38.1 transcript entirely within coding transcript NM_001003652 +STRG.39.1 32.6% exonic overlap with coding transcript NM_004152 +STRG.40.1 88.6% exonic overlap with coding transcript NM_002967 +STRG.41.1 99.6% exonic overlap with coding transcript NM_014649 +STRG.43.1 aligns to STRG.10.1 with 89.5% identity and 99.3% coverage. Appears to be duplication. +STRG.43.1 aligns to STRG.7.1 with 90.7% identity and 100.0% coverage. Appears to be duplication. +STRG.46.1 aligns to STRG.1.1 with 98.5% identity and 99.9% coverage. Appears to be duplication. +STRG.47.1 aligns to STRG.2.1 with 98.6% identity and 99.9% coverage. Appears to be duplication. +STRG.48.1 aligns to STRG.3.1 with 98.2% identity and 99.9% coverage. Appears to be duplication. +STRG.6.1 aligns to STRG.15.2 with 97.0% identity and 100.0% coverage. Appears to be duplication. +STRG.6.1 aligns to STRG.22.1 with 97.1% identity and 100.0% coverage. Appears to be duplication. +STRG.7.1 aligns to STRG.10.1 with 90.1% identity and 98.9% coverage. Appears to be duplication. +STRG.7.1 aligns to STRG.43.1 with 90.7% identity and 100.0% coverage. Appears to be duplication. +STRG.9.1 transcript entirely within coding transcript NM_020357