Mercurial > repos > tyty > structurefold
annotate Iterative_mapping/map_ex.py @ 114:e269e4c6818e draft
Uploaded
author | tyty |
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date | Tue, 14 Apr 2015 14:12:35 -0400 |
parents | d56631911cc1 |
children |
rev | line source |
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0 | 1 #!/usr/bin/env python |
2 # -*- coding: utf-8 -*- | |
3 | |
4 import sys | |
5 from read_file import * | |
6 from Bio import SeqIO | |
7 | |
8 map_file = sys.argv[1] | |
9 result_file = sys.argv[2] | |
10 | |
11 | |
12 #reads = read_t_file(read_file); | |
13 | |
14 f = open(map_file); | |
15 h = file(result_file, 'w') | |
16 | |
17 for aline in f.readlines(): | |
18 tline = aline.strip(); | |
19 tl = tline.split('\t'); | |
20 if len(tl)>4: | |
21 if int(tl[1].strip())== 0: | |
22 h.write(tline) | |
23 h.write('\n') | |
24 | |
25 | |
26 f.close(); | |
27 h.close() | |
28 | |
29 | |
30 | |
31 |