Mercurial > repos > tyty > structurefold
comparison reactivity_cal/reactivity_calculation.xml @ 45:28664b289a69 draft
Uploaded
| author | tyty |
|---|---|
| date | Mon, 20 Oct 2014 16:05:39 -0400 |
| parents | 8bf6c855353b |
| children |
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| 44:5d7cdbf181a3 | 45:28664b289a69 |
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| 1 <tool id="react_cal_pipeline" name="Reactivity calculation" version="1.0"> | 1 <tool id="react_cal_pipeline" name="Reactivity calculation" version="1.0"> |
| 2 <description></description> | 2 <description></description> |
| 3 <command interpreter="python">react_cal.py $dist_file1 $dist_file2 $seq_file $nt_spec $flag_in $threshold $output </command> | 3 <command interpreter="python">react_cal.py $dist_file1 $dist_file2 $seq_file $nt_spec $flag_in $threshold $output </command> |
| 4 <requirements> | 4 <requirements> |
| 5 <requirement type="package" version="1.61">biopython</requirement> | 5 <requirement type="package" version="1.61">biopython</requirement> |
| 6 <requirement type="package" version="1.7">numpy</requirement> | 6 <requirement type="package" version="1.7.1">numpy</requirement> |
| 7 </requirements> | 7 </requirements> |
| 8 <inputs> | 8 <inputs> |
| 9 <param name="dist_file1" type="data" format="txt" label="RTSC file for (+) library"/> | 9 <param name="dist_file1" type="data" format="txt" label="RTSC file for (+) library"/> |
| 10 <param name="dist_file2" type="data" format="txt" label="RTSC file for (-) library"/> | 10 <param name="dist_file2" type="data" format="txt" label="RTSC file for (-) library"/> |
| 11 <param name="seq_file" type="data" format="fasta" label="Reference library"/> | 11 <param name="seq_file" type="data" format="fasta" label="Reference library"/> |