Mercurial > repos > tyty > structurefold
comparison predict/predict_RNAs.xml @ 46:698d5897b999 draft
Uploaded
| author | tyty |
|---|---|
| date | Mon, 20 Oct 2014 16:06:16 -0400 |
| parents | 128fcc5aedde |
| children |
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| 45:28664b289a69 | 46:698d5897b999 |
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| 1 <tool id="predict_pipeline" name="RNA structure prediction" version="1.0"> | 1 <tool id="predict_pipeline" name="RNA structure prediction" version="1.0"> |
| 2 <description></description> | 2 <description></description> |
| 3 <command interpreter="python">predict_RNAs.py $rna_list $reference_file $reactivity_file $output </command> | 3 <command interpreter="python">predict_RNAs.py $rna_list $reference_file $reactivity_file $output </command> |
| 4 <requirements> | 4 <requirements> |
| 5 <requirement type="package" version="1.61">biopython</requirement> | 5 <requirement type="package" version="1.61">biopython</requirement> |
| 6 <requirement type="package" version="1.7">numpy</requirement> | 6 <requirement type="package" version="1.7.1">numpy</requirement> |
| 7 <requirement type="package" version="1.2.1">matplotlib</requirement> | 7 <requirement type="package" version="1.2.1">matplotlib</requirement> |
| 8 </requirements> | 8 </requirements> |
| 9 <inputs> | 9 <inputs> |
| 10 <param name="rna_list" type="data" format="txt" label="List of RNA ids to predict"/> | 10 <param name="rna_list" type="data" format="txt" label="List of RNA ids to predict"/> |
| 11 <param name="reference_file" type="data" format="fasta" label="Reference genome/transcriptome"/> | 11 <param name="reference_file" type="data" format="fasta" label="Reference genome/transcriptome"/> |