Mercurial > repos > tyty > structurefold
comparison reactivity_cal/parse_dis_react.py @ 26:8bf6c855353b draft
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author | tyty |
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date | Mon, 20 Oct 2014 14:41:56 -0400 |
parents | 7a8ddf1819b1 |
children |
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25:90bc1ead3abd | 26:8bf6c855353b |
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1 #!/usr/bin/env python | |
2 # -*- coding: utf-8 -*- | |
3 import sys | |
4 | |
5 def parse_dist(in_file): | |
6 result = [] | |
7 distribution = {} | |
8 name = [] | |
9 f = open(in_file) | |
10 flag = 0 | |
11 for aline in f.readlines(): | |
12 line = aline.strip() | |
13 dis = line.strip() | |
14 dist = dis.split('\t') | |
15 if len(dist) > 0: | |
16 if len(dist) == 1: | |
17 if dist[0].strip().find('coverage')==-1: | |
18 if flag == 0: | |
19 name.append(line) | |
20 flag = 1 | |
21 t_name = line | |
22 else: | |
23 distribution[t_name] = 'null' | |
24 name.append(line) | |
25 flag = 1 | |
26 t_name = line | |
27 else: | |
28 distri = [] | |
29 for i in range(0, len(dist)): | |
30 distri.append(dist[i].strip()) | |
31 distribution[t_name] = distri | |
32 flag = 0 | |
33 result.append(name) | |
34 result.append(distribution) | |
35 f.close() | |
36 return result | |
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