Mercurial > repos > tyty > structurefold
comparison get_reads/get_read.xml @ 43:9fbbe00a2de2 draft
Uploaded
| author | tyty |
|---|---|
| date | Mon, 20 Oct 2014 16:03:47 -0400 |
| parents | 90bc1ead3abd |
| children |
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| 42:128fcc5aedde | 43:9fbbe00a2de2 |
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| 1 <tool id="get_read_pipeline" name="Get RT stop counts" version="1.0"> | 1 <tool id="get_read_pipeline" name="Get RT stop counts" version="1.0"> |
| 2 <description></description> | 2 <description></description> |
| 3 <command interpreter="python">get_read.py $lib_file $map_file $output </command> | 3 <command interpreter="python">get_read.py $lib_file $map_file $output </command> |
| 4 <requirements> | 4 <requirements> |
| 5 <requirement type="package" version="1.61">biopython</requirement> | 5 <requirement type="package" version="1.61">biopython</requirement> |
| 6 <requirement type="package" version="1.7">numpy</requirement> | 6 <requirement type="package" version="1.7.1">numpy</requirement> |
| 7 <requirement type="package" version="0.1.18">samtools</requirement> | 7 <requirement type="package" version="0.1.18">samtools</requirement> |
| 8 </requirements> | 8 </requirements> |
| 9 <inputs> | 9 <inputs> |
| 10 <param name="lib_file" type="data" format="fasta" label="Library file (fasta)"/> | 10 <param name="lib_file" type="data" format="fasta" label="Library file (fasta)"/> |
| 11 <param name="map_file" type="data" format="bam" label="Mapped file"/> | 11 <param name="map_file" type="data" format="bam" label="Mapped file"/> |