diff reactivity_cal/parse_dis_react.py @ 5:7a8ddf1819b1 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/reactivity_cal/parse_dis_react.py	Mon Sep 15 14:52:52 2014 -0400
@@ -0,0 +1,51 @@
+#!/usr/bin/env python
+# -*- coding: utf-8 -*-
+import sys
+
+def parse_dist(in_file):
+    result = []
+    distribution = {}
+    name = []
+    f = open(in_file)
+    flag = 0
+    for aline in f.readlines():
+        line = aline.strip()
+        dis = line.strip()
+        dist = dis.split('\t')
+        if len(dist) > 0:
+            if len(dist) == 1:
+                if dist[0].strip().find('coverage')==-1:
+                    if flag == 0:
+                        name.append(line)
+                        flag = 1
+                        t_name = line
+                    else:
+                        distribution[t_name] = 'null'
+                        name.append(line)
+                        flag = 1
+                        t_name = line
+            else:
+                distri = []
+                for i in range(0, len(dist)):
+                    distri.append(dist[i].strip())
+                distribution[t_name] = distri
+                flag = 0
+    result.append(name)
+    result.append(distribution)
+    f.close()
+    return result
+                
+                
+
+
+
+
+
+
+
+        
+
+
+
+
+