Mercurial > repos > tyty > structurefold
diff predict/ct_to_dot.py @ 93:f1eb39775b93 draft
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author | tyty |
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date | Mon, 16 Feb 2015 02:29:27 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/predict/ct_to_dot.py Mon Feb 16 02:29:27 2015 -0500 @@ -0,0 +1,34 @@ +#!/usr/bin/env python +# -*- coding: utf-8 -*- + +import sys +import shlex +import os +import subprocess +from read_file import * + +ct_file = sys.argv[1] +path = sys.argv[2] +id_s = sys.argv[3] +result_file = sys.argv[4] + +h = file(result_file, 'w') +os.system('grep "'+id_s+'" '+ct_file+' |wc -l > '+path+'/count.txt') +count = read_t_file(path+'/count.txt') +for i in range(int(count[0][0])): + command = shlex.split('ct2dot %s %s %s' % (ct_file, str(i+1), os.path.join(path, 'db_file_%s.dbnn' % str(i+1)))) + subprocess.call(command) + + + +os.system('cat '+path+'/*.dbnn > '+result_file) +for i in range(int(count[0][0])): + command = shlex.split('rm %s' % (os.path.join(path, 'db_file_%s.dbnn' % str(i+1)))) + subprocess.call(command) +command = shlex.split('rm %s' % (os.path.join(path, 'count.txt'))) +subprocess.call(command) + + + +h.close() +