diff predict/dot_convert.py @ 93:f1eb39775b93 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/predict/dot_convert.py	Mon Feb 16 02:29:27 2015 -0500
@@ -0,0 +1,45 @@
+#!/usr/bin/env python
+# -*- coding: utf-8 -*-
+
+import sys
+
+dot_file = sys.argv[1]
+result_file = sys.argv[2]
+
+h = file(result_file, 'w')
+f = open(dot_file)
+
+
+
+for aline in f.readlines():
+    line = aline.strip()
+    if line.find('>')!=-1:
+        id_line = line
+        idt = id_line.split('>')
+        ids = idt[1].strip()
+    else:
+        if line.find('(')!=-1:
+            structure_line = line
+            st = structure_line.split(' ')
+            structure = st[0].strip()
+            enert = st[1].strip()
+            if len(enert)>1:
+                enertt = enert.split('(')
+                enertt = enertt[1].strip()
+            else:
+                enertt = st[2].strip()
+            enerttt = enertt.split(')')
+            ener = enerttt[0].strip()
+            h.write('>ENERGY = '+ener+'  '+ids+'\n')
+            h.write(seq+'\n')
+            h.write(structure+'\n')
+        else:
+            seq = line
+
+
+    
+
+
+f.close()
+h.close()
+