diff Iterative_mapping/map_ex.py @ 3:f4cc06e92530 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/Iterative_mapping/map_ex.py	Mon Sep 15 14:52:20 2014 -0400
@@ -0,0 +1,31 @@
+#!/usr/bin/env python
+# -*- coding: utf-8 -*-
+
+import sys
+from read_file import *
+from Bio import SeqIO
+
+map_file = sys.argv[1]
+result_file = sys.argv[2]
+
+
+#reads = read_t_file(read_file);
+
+f = open(map_file);
+h = file(result_file, 'w')
+
+for aline in f.readlines():
+    tline = aline.strip();
+    tl = tline.split('\t');
+    if len(tl)>4:
+        if int(tl[1].strip())== 0:
+            h.write(tline)
+            h.write('\n')
+
+
+f.close();
+h.close()
+
+
+
+