Mercurial > repos > tyty > structurefold
view Iterative_mapping/map_ex.py @ 53:52538ebd3c4b draft
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author | tyty |
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date | Mon, 17 Nov 2014 15:14:21 -0500 |
parents | d56631911cc1 |
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#!/usr/bin/env python # -*- coding: utf-8 -*- import sys from read_file import * from Bio import SeqIO map_file = sys.argv[1] result_file = sys.argv[2] #reads = read_t_file(read_file); f = open(map_file); h = file(result_file, 'w') for aline in f.readlines(): tline = aline.strip(); tl = tline.split('\t'); if len(tl)>4: if int(tl[1].strip())== 0: h.write(tline) h.write('\n') f.close(); h.close()