Mercurial > repos > tyty > structurefold

changeset 110:18ec443d632b draft

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Uploaded
author tyty
date Sat, 28 Mar 2015 17:05:13 -0400
parents 4e13117db219
children 9c57713215bb
files predict/predict_RNAs.xml tool_dependencies.xml tool_dependencies.xml.orig
diffstat 3 files changed, 28 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/predict/predict_RNAs.xml	Thu Mar 26 14:52:19 2015 -0400
+++ b/predict/predict_RNAs.xml	Sat Mar 28 17:05:13 2015 -0400
@@ -25,6 +25,7 @@
                 <requirement type="package" version="5.7">rnastructure</requirement>
                 <requirement type="package" version="1.61">biopython</requirement>
                 <requirement type="package" version="1.7.1">numpy</requirement>
+                <requirement type="package" version="1.1.7">imaging</requirement>
                 <requirement type="package" version="1.2.1">matplotlib</requirement>
         </requirements>
 	<inputs>
--- a/tool_dependencies.xml	Thu Mar 26 14:52:19 2015 -0400
+++ b/tool_dependencies.xml	Sat Mar 28 17:05:13 2015 -0400
@@ -15,6 +15,9 @@
     <package name="bowtie" version="0.12.7">
         <repository changeset_revision="9f9f38617a98" name="package_bowtie_0_12_7" owner="devteam" prior_installation_required="False" toolshed="http://toolshed.g2.bx.psu.edu" />
     </package>
+    <package name="imaging" version="1.1.7">
+      <repository changeset_revision="d5f2627f4cfd" name="package_imaging_1_1_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
     <package name="matplotlib" version="1.2.1">
         <repository changeset_revision="fe60617380df" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="False" toolshed="http://toolshed.g2.bx.psu.edu" />
     </package>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml.orig	Sat Mar 28 17:05:13 2015 -0400
@@ -0,0 +1,24 @@
+<?xml version="1.0"?>
+<tool_dependency>
+  <package name="rnastructure" version="5.7">
+      <repository changeset_revision="a7e4328e1919" name="package_rnastructure_5_7" owner="iuc" toolshed="http://gaius.bx.psu.edu:9009" />
+    </package>
+    <package name="biopython" version="1.61">
+      <repository changeset_revision="12eb2448f7e3" name="package_biopython_1_61" owner="biopython" prior_installation_required="True" toolshed="http://gaius.bx.psu.edu:9009" />
+    </package>
+    <package name="numpy" version="1.7.1">
+      <repository changeset_revision="b8c74cd7b4e9" name="package_numpy_1_7" owner="iuc" toolshed="http://gaius.bx.psu.edu:9009" />
+    </package>
+    <package name="samtools" version="0.1.18">
+      <repository changeset_revision="f1885df2a943" name="package_samtools_0_1_18" owner="devteam" toolshed="http://gaius.bx.psu.edu:9009" />
+    </package>
+    <package name="bowtie" version="0.12.7">
+      <repository changeset_revision="de68886e7e18" name="package_bowtie_0_12_7" owner="devteam" toolshed="http://gaius.bx.psu.edu:9009" />
+    </package>
+    <package name="imaging" version="1.1.7">
+      <repository changeset_revision="213af494db5a" name="package_imaging_1_1_7" owner="iuc" toolshed="http://gaius.bx.psu.edu:9009" />
+    </package>
+    <package name="matplotlib" version="1.2.1">
+      <repository changeset_revision="ef93c83f8c07" name="package_matplotlib_1_2" owner="iuc" toolshed="http://gaius.bx.psu.edu:9009" />
+    </package>
+</tool_dependency>