comparison phyloconversion/gb2phytab.xml @ 0:5b9a38ec4a39 draft default tip

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0:5b9a38ec4a39

<tool id="gb2phytab" name="GB2PHYTAB" version="1.0">
    <description> Convert GenBank format flat file to PHYTAB tabular file </description>
    <requirements>
        <requirement type="package">raxml</requirement>
    </requirements>
    <command interpreter="perl">
        gb2phytab.pl $data_file $outfile 2>&amp;1
    </command>
    <inputs>
        <param format="txt" name="data_file" type="data" label="Genbank format infile." help="Can download from GenBank with get_gb and get_1_gb"/>
    </inputs>
    <outputs>
        <data format="tabular" name="outfile" label="Phytab file from ${on_string}" />
    </outputs>
    <help>
**What it does**

This tool converts a file in the GenBank (NCBI) flat file format to the PHYTAB tabular format.

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**Inputs**

GenBank flat file format. Description: http://www.ncbi.nlm.nih.gov/Sitemap/samplerecord

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**Outputs**

PHYTAB tabular file format. Description:: 
http://osiris-phylogenetics.blogspot.com/2012/09/introduction-to-phytab-format.html 

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**Additional Information**

Please direct questions or comments to [e-mail] or, if you can, enter them on the 
osiris_phylogenetics site at bitbucket.org

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**Citations**

This tool is part of the Osiris Phylogenetics Tool Package for Galaxy. If you make extensive use of this tool in a 
publication, please consider citing the following.

Current Osiris Citation is here

http://osiris-phylogenetics.blogspot.com/2012/10/citation.html
	</help>
</tool>