comparison phyloconversion/phylip2fasta.xml @ 0:5b9a38ec4a39 draft default tip

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0:5b9a38ec4a39

<tool id="phylip2fasta" name="phylip2fasta" version="1.0">
    <description>Converts phylip file to fasta format</description>
    <command interpreter="perl">
		phylip2fasta.pl $infile $interlv $idlen > $outfile
    </command>
    <inputs>
	    <param name="infile" type="data" format="phylip" label="Input File" help="file to convert" />
        <param name='interlv' type='boolean' checked='false' truevalue='1' falsevalue='0' label='Interleaved' help='Check if input file is interleaved'/>
	<param name="idlen" type="integer" value="10" label="Specify Number characters in sequence IDs" />
    </inputs>
    <outputs>
	<data format="fasta" name="outfile" label="${tool.name} on ${on_string}: FASTA file" />
    </outputs>
    <help> **What it does**

phylip2fasta takes an input phylip file and converts it to a fasta file

------

**Inputs**

A phylip file with sequences from the same species and gene family. The user must choose if the file 
is interleaved, and specifiy the number of characters in the ID's of the sequences (default phylip 
format is 10). ------

**Outputs**

FASTA file

-------

**Additional Information**

Please direct questions or comments to [e-mail] or preferably, if you 
can, enter them on the osiris_phylogenetics repository site at bitbucket.org

------

**Citations**

This tool is part of the Osiris Phylogenetics Tool Package for Galaxy. If you make extensive use of 
this tool in a publication, please consider citing the following.

Current Osiris Citation is here

http://osiris-phylogenetics.blogspot.com/2012/10/citation.html
    </help> </tool>