Mercurial > repos > ucsb-phylogenetics > osiris_phylogenetics
comparison phylogenies/beast.sh @ 0:5b9a38ec4a39 draft default tip
First commit of old repositories
| author | osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu> |
|---|---|
| date | Tue, 11 Mar 2014 12:19:13 -0700 |
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| children |
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| -1:000000000000 | 0:5b9a38ec4a39 |
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| 1 #!/bin/bash | |
| 2 | |
| 3 # Helper script to change output file names then run BEAST. | |
| 4 | |
| 5 # Usage: ./beast.sh STDOUT_LOG XMLCONFIG BEAGLESSE | |
| 6 | |
| 7 newxml=$(python26 /home/galaxy/galaxy-dist/tools/osiris/phylogenies/beast.py ${2} $(pwd)) | |
| 8 java -jar -Xms4096m -Xmx8192m /home/galaxy/pkgs/BEAST172/lib/beast.jar -overwrite ${3} -threads 8 ${newxml} > ${1} 2>&1 |