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diff phylogenies/place_fossil_ml.sh @ 0:5b9a38ec4a39 draft default tip

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author osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
date Tue, 11 Mar 2014 12:19:13 -0700
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/phylogenies/place_fossil_ml.sh	Tue Mar 11 12:19:13 2014 -0700
@@ -0,0 +1,9 @@
+#!/bin/bash
+datafile=$1	#binary datafile
+model=BINGAMMA
+morphmodel=MK
+tree=$2
+reps=100
+
+raxmlHPC-PTHREADS-SSE3 -T 8 -f u -s $datafile -K $morphmodel -m $model -n galaxy -t $tree -N $reps
+raxmlHPC-PTHREADS-SSE3 -T 8 -f v -s $datafile -K $morphmodel -m $model -a RAxML_weights.galaxy -n fossil_weights -t $tree -N $reps