view alignment/fasconcat.xml @ 0:5b9a38ec4a39 draft default tip

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<tool id="fasconcat" name="FASConcat" version="1.0">
	<description>Appends all input sequence files into one file</description>
	<command interpreter="perl">fasconcat.pl $outputFormat $totalNum
	#for $file in $sourceFiles
		${file.input}
	#end for
	</command>
	<inputs>
		<param name="totalNum" type="integer" value="1" label="Total number of input files" />
		<repeat name="sourceFiles" title="Input files (FASTA, Phylip or NEXUS)" >
			<param name="input" type="data" label="input files" />
		</repeat>
		<param name="outputFormat" type="select" label="Choose the output file format">
			<option value="0" selected="true">FASTA Only</option>
			<option value="1">Phylip Only</option>
			<option value="2">NEXUS Only</option>
		</param>
	</inputs>

	<outputs>
		<data from_work_dir="FcC_info.xls" />
		<data from_work_dir="output" />
	</outputs>
    <help>
**What it does**

FASConcat appends all input sequences into one file.

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**Inputs**

FASTA, Phylip, NEXUS

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**Outputs**

FASTA, Phylip, NEXUS

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**Additional Information**

Please direct questions or comments to [e-mail] or, if you can, enter them on the 
osiris_phylogenetics site at bitbucket.org

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**Citations**

This tool is part of the Osiris Phylogenetics Tool Package for Galaxy. If you make extensive use of this 
tool in a publication, please consider citing the following.

Current Osiris Citation is here

http://osiris-phylogenetics.blogspot.com/2012/10/citation.html
 </help>
</tool>