Mercurial > repos > ucsb-phylogenetics > osiris_phylogenetics

<tool id="mview" name="MView" version="1.0">
	<description>View multiple sequence alignment in HTML</description>
	<requirements><requirement type="package">mview</requirement></requirements>
	<command interpreter="perl">mview.pl $input $dna > $output </command>
	<inputs>
		<param format="fasta" name="input" type="data" label="Aligned fasta file to visualize" />
    		<param name="dna" type="select" label="Data type">
      			<option value="DNA">DNA</option>
      			<option value="Protein">Protein</option>
		</param>

	</inputs>
	<outputs>
		<data format="html" name="output" label="${tool.name} on ${on_string}: Alignment" />
	</outputs>
<help>
**What it does**

From the MView website: http://bio-mview.sourceforge.net/

MView reformats the results of a sequence database search or a multiple alignment adding optional HTML markup to control coloring and webpage layout.

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**Inputs**

FASTA

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**Outputs**

HTML

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**Additional Information**

Please direct questions or comments to ucsb_phylogenetics@lifesci.ucsb.edu or, if you can, enter them on the osiris_phylogenetics site at bitbucket.org

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**Citations**

This tool is part of the Osiris Phylogenetics Tool Package for Galaxy. If you make extensive use of this tool in a publication, please consider
citing the following.

Current Osiris Citation is here

http://osiris-phylogenetics.blogspot.com/2012/10/citation.html

Additional Citations for this tool

Citation for MView:

Brown, N.P., Leroy C., Sander C. (1998). MView: A Web compatible database search or multiple alignment viewer. Bioinformatics. 14(4):380-381.

</help>
</tool>
author	osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
date	Tue, 11 Mar 2014 12:19:13 -0700
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