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author osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
date Tue, 11 Mar 2014 12:19:13 -0700
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<tool id="phytab_hmmbuild" name="phytab HMMBUILD" version="3.0">
  <description>hmmbuild :: profile HMM construction from multiple sequence alignments in phytab format.</description>
  <requirements>
    <requirement type="package">hmmbuild</requirement>
  </requirements>
  <command interpreter="python">
    hmmbuild.py -i $data > $hmmbuild_stdout 2>&amp;1
  </command>
  <inputs>
    <param format="txt" name="data" type="data" label="Sequence data" help="This should be sequence data from EvolMAP"/>
  </inputs>
  <outputs>
    <data format="txt" name="hmmbuild_stdout" label="${tool.name} on ${on_string}: stdout" />
    <data format="txt" name="hmmbuild_results" label="${tool.name} on ${on_string}: results" from_work_dir="data/results.data" />
  </outputs>
  <tests>
  </tests>
  <help>
  **hmmbuild v3.0**
  
  Runs hmmbuild on MUSCLE alignment data.

  See hmmbuild help: ftp://selab.janelia.org/pub/software/hmmer3/3.0/Userguide.pdf
  </help>
</tool>