Mercurial > repos > ufz > checkv_build_database

changeset 2:88042a5ead89 draft

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planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_checkv commit c78bd5eafa3d9450305cc8b32ba9cf8c64c42ba7
author ufz
date Mon, 18 Nov 2024 15:26:03 +0000
parents 3756ac7a625b
children 7e80c69020f7
files data_manager/checkv_datamanager.xml
diffstat 1 files changed, 3 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/checkv_datamanager.xml	Fri Sep 20 09:44:08 2024 +0000
+++ b/data_manager/checkv_datamanager.xml	Mon Nov 18 15:26:03 2024 +0000
@@ -2,7 +2,7 @@
     <description>database builder</description>
     <macros>
         <token name="@TOOL_VERSION@">1.0.3</token>
-        <token name="@VERSION_SUFFIX@">1</token>
+        <token name="@VERSION_SUFFIX@">2</token>
         <token name="@PROFILE@">22.01</token>
     </macros>
     <requirements>
@@ -16,7 +16,8 @@
         cd checkv-db-v${version}/genome_db/ &&
         diamond makedb --in checkv_reps.faa --db checkv_reps &&
         cd - &&
-        mv checkv-db-v${version} checkv-db &&
+        mkdir -p '$out_file.extra_files_path' &&
+        mv checkv-db-v${version} '$out_file.extra_files_path'/checkv-db &&
         cp '$dmjson' '$out_file'
     ]]></command>
     <configfiles>