annotate data_manager_conf.xml @ 0:c4ec3d81eeee draft

planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_genomad commit 483ade5362574a59ddc87e3788334bcbff253805
author ufz
date Tue, 18 Jun 2024 14:28:27 +0000
parents
children 75abfb03b635
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
c4ec3d81eeee planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_genomad commit 483ade5362574a59ddc87e3788334bcbff253805
ufz
parents:
diff changeset
1 <data_managers>
c4ec3d81eeee planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_genomad commit 483ade5362574a59ddc87e3788334bcbff253805
ufz
parents:
diff changeset
2 <data_manager tool_file="data_manager/genomad_datamanager.xml" id="genomad_build_database">
c4ec3d81eeee planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_genomad commit 483ade5362574a59ddc87e3788334bcbff253805
ufz
parents:
diff changeset
3 <data_table name="genomad">
c4ec3d81eeee planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_genomad commit 483ade5362574a59ddc87e3788334bcbff253805
ufz
parents:
diff changeset
4 <output>
c4ec3d81eeee planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_genomad commit 483ade5362574a59ddc87e3788334bcbff253805
ufz
parents:
diff changeset
5 <column name="value"/>
c4ec3d81eeee planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_genomad commit 483ade5362574a59ddc87e3788334bcbff253805
ufz
parents:
diff changeset
6 <column name="name"/>
c4ec3d81eeee planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_genomad commit 483ade5362574a59ddc87e3788334bcbff253805
ufz
parents:
diff changeset
7 <column name="path" output_ref="out_file">
c4ec3d81eeee planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_genomad commit 483ade5362574a59ddc87e3788334bcbff253805
ufz
parents:
diff changeset
8 <move type="directory">
c4ec3d81eeee planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_genomad commit 483ade5362574a59ddc87e3788334bcbff253805
ufz
parents:
diff changeset
9 <source>${path}</source>
c4ec3d81eeee planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_genomad commit 483ade5362574a59ddc87e3788334bcbff253805
ufz
parents:
diff changeset
10 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">genomad_databases/${path}</target>
c4ec3d81eeee planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_genomad commit 483ade5362574a59ddc87e3788334bcbff253805
ufz
parents:
diff changeset
11 </move>
c4ec3d81eeee planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_genomad commit 483ade5362574a59ddc87e3788334bcbff253805
ufz
parents:
diff changeset
12 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/genomad_databases/${path}</value_translation>
c4ec3d81eeee planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_genomad commit 483ade5362574a59ddc87e3788334bcbff253805
ufz
parents:
diff changeset
13 <value_translation type="function">abspath</value_translation>
c4ec3d81eeee planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_genomad commit 483ade5362574a59ddc87e3788334bcbff253805
ufz
parents:
diff changeset
14 </column>
c4ec3d81eeee planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_genomad commit 483ade5362574a59ddc87e3788334bcbff253805
ufz
parents:
diff changeset
15 </output>
c4ec3d81eeee planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_genomad commit 483ade5362574a59ddc87e3788334bcbff253805
ufz
parents:
diff changeset
16 </data_table>
c4ec3d81eeee planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_genomad commit 483ade5362574a59ddc87e3788334bcbff253805
ufz
parents:
diff changeset
17 </data_manager>
c4ec3d81eeee planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_genomad commit 483ade5362574a59ddc87e3788334bcbff253805
ufz
parents:
diff changeset
18 </data_managers>