comparison data_manager/genomad_datamanager.xml @ 1:03623fc64d5c draft

planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_genomad commit c78bd5eafa3d9450305cc8b32ba9cf8c64c42ba7

0:c4ec3d81eeee

<?xml version="1.0"?>
<tool id="genomad_build_database" name="geNomad" tool_type="manage_data" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
    <description>database builder</description>
    <macros>
        <token name="@TOOL_VERSION@">1.8.0</token>
        <token name="@VERSION_SUFFIX@">0</token>
        <token name="@PROFILE@">22.01</token>
    </macros>
    <requirements>
        <requirement type="package" version="1.21.4">wget</requirement>
    </requirements>

            ##     https://zenodo.org/records/11945948/files/genomad_microdb.tar.gz?download=1
            ## #else
                https://zenodo.org/records/10594875/files/genomad_db_v${version}.tar.gz?download=1
            ## #end if
        | tar -xzv &&
        cp '$dmjson' '$out_file'
    ]]></command>
    <configfiles>
        <configfile name="dmjson"><![CDATA[
{

1:03623fc64d5c

<?xml version="1.0"?>
<tool id="genomad_build_database" name="geNomad" tool_type="manage_data" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
    <description>database builder</description>
    <macros>
        <token name="@TOOL_VERSION@">1.8.0</token>
        <token name="@VERSION_SUFFIX@">1</token>
        <token name="@PROFILE@">22.01</token>
    </macros>
    <requirements>
        <requirement type="package" version="1.21.4">wget</requirement>
    </requirements>

            ##     https://zenodo.org/records/11945948/files/genomad_microdb.tar.gz?download=1
            ## #else
                https://zenodo.org/records/10594875/files/genomad_db_v${version}.tar.gz?download=1
            ## #end if
        | tar -xzv &&
        mkdir -p '$out_file.extra_files_path' &&
        mv genomad_db '$out_file.extra_files_path' &&
        cp '$dmjson' '$out_file'
    ]]></command>
    <configfiles>
        <configfile name="dmjson"><![CDATA[
{