diff macros.xml @ 0:5ad32d18fe82 draft

planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 636cbb62d59819caca5bc9eab0a8ec31be5bdd46

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Mon Dec 16 20:56:16 2024 +0000
@@ -0,0 +1,56 @@
+<macros>
+    <!-- for historic reasons the omero-py version is used as the version for all tools -->
+    <token name="@TOOL_VERSION@">5.18.0</token>
+    <token name="@EZOMERO_VERSION@">3.0.1</token>
+    <token name="@PROFILE@">23.0</token>
+
+    <xml name="ezomero_requirements">
+        <requirements>
+            <requirement type="package" version="@EZOMERO_VERSION@">ezomero</requirement>
+            <requirement type="package" version="2.2.2">pandas</requirement>
+            <yield/>
+        </requirements>
+    </xml>
+
+    <xml name="omeropy_requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">omero-py</requirement>
+            <!-- openjdk is needed: https://github.com/conda-forge/omero-py-feedstock/pull/16 -->
+            <requirement type="package" version="21.0.2">openjdk</requirement>
+            <yield/>
+        </requirements>
+    </xml>
+    
+
+    <xml name="host_port">
+        <param name="omero_host" type="text" label="OMERO host URL">
+            <validator type="regex" message="Enter a valid host location, for example, your.omero.server">^[a-zA-Z0-9._-]*$</validator>
+            <validator type="expression" message="No two dots (..) allowed">'..' not in value</validator>
+        </param>
+        <param argument="omero_port" type="integer" optional="false" value="4064" label="OMERO port"/>
+        <param name="test_username" type="hidden" value=""/>
+        <param name="test_password" type="hidden" value=""/>
+    </xml>
+    <token name="@HOST_PORT@">
+        --host '$omero_host'
+        --port $omero_port
+    </token>
+
+    <xml name="credentials">
+        <configfile name="credentials"><![CDATA[
+{
+    "username": "$__user__.extra_preferences.get('omero_account|username', $test_username)",
+    "password": "$__user__.extra_preferences.get('omero_account|password', $test_password)"
+}
+        ]]></configfile>
+    </xml>
+
+    <token name="@SECURITY_DISCLAIMER@">
+    **OMERO-suite Security Diclaimer:** To utilize the OMERO tools, the user must trust Galaxy instances.
+    The configuration file, which contains your OMERO password and username, is stored in the job working directory.
+    This directory only exists during the runtime of the job and should only be accessible by the system user that runs the job.
+    However, please be aware that your username and password may be exposed to users with administrative rights.
+    We are working on increasing the security of the OMERO suite
+    </token>
+
+</macros>
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