# HG changeset patch # User ufz # Date 1730185180 0 # Node ID ae07ea142e0fe16020976c1f18eebe4468fa1485 # Parent c23735b45a4a0cf05b0b3571086bd72804f1db26 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit d69e684236ce5d36a09e84f1eae6d8c98ed7499b diff -r c23735b45a4a -r ae07ea142e0f macros.xml --- a/macros.xml Tue Oct 22 11:53:30 2024 +0000 +++ b/macros.xml Tue Oct 29 06:59:40 2024 +0000 @@ -44,4 +44,13 @@ } ]]> + + + **OMERO-suite Security Diclaimer:** To utilize the OMERO tools, the user must trust Galaxy instances. + The configuration file, which contains your OMERO password and username, is stored in the job working directory. + This directory only exists during the runtime of the job and should only be accessible by the system user that runs the job. + However, please be aware that your username and password may be exposed to users with administrative rights. + We are working on increasing the security of the OMERO suite + + \ No newline at end of file diff -r c23735b45a4a -r ae07ea142e0f omero_get_id.xml --- a/omero_get_id.xml Tue Oct 22 11:53:30 2024 +0000 +++ b/omero_get_id.xml Tue Oct 29 06:59:40 2024 +0000 @@ -162,15 +162,23 @@ Tool to fetch project, dataset, images, annotations, tags, table and ROIs IDs user defined OMERO.server. -Options: +**Options**: + Project -> Project IDs present in the OMERO.server + Dataset -> Dataset IDs present in a specific Project or in the server + Image -> Image IDs present in a specific Dataset or Project or Well or Plate or in the server + Annotation (Key-Value Pairs) -> Annotation IDs linked to an Image or Dataset or Project or Well or Plate + Tag -> Tag IDs linked to an Image or Dataset or Project or Well or Plate + ROI -> ROI IDs linked to an Image + Table -> Table linked to an Image or Dataset or Project or Well or Plate +@SECURITY_DISCLAIMER@ 10.1038/nmeth.1896