Mercurial > repos > ufz > omero_metadata_import
annotate README.md @ 4:351c6b43e16c draft
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit d69e684236ce5d36a09e84f1eae6d8c98ed7499b
author | ufz |
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date | Tue, 29 Oct 2024 06:59:10 +0000 |
parents | 352e9d4eaf70 |
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352e9d4eaf70
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit b9d952c8874f75f738ca4121d7e5274a7946035a
ufz
parents:
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1 # OMERO import images |
352e9d4eaf70
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit b9d952c8874f75f738ca4121d7e5274a7946035a
ufz
parents:
diff
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2 |
352e9d4eaf70
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit b9d952c8874f75f738ca4121d7e5274a7946035a
ufz
parents:
diff
changeset
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3 ## Set up user credentials on Galaxy to connect to other omero instance |
352e9d4eaf70
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit b9d952c8874f75f738ca4121d7e5274a7946035a
ufz
parents:
diff
changeset
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4 |
352e9d4eaf70
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit b9d952c8874f75f738ca4121d7e5274a7946035a
ufz
parents:
diff
changeset
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5 To enable users to set their credentials for this tool, |
352e9d4eaf70
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit b9d952c8874f75f738ca4121d7e5274a7946035a
ufz
parents:
diff
changeset
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6 make sure the file `config/user_preferences_extra.yml` has the following section: |
352e9d4eaf70
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit b9d952c8874f75f738ca4121d7e5274a7946035a
ufz
parents:
diff
changeset
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7 |
352e9d4eaf70
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit b9d952c8874f75f738ca4121d7e5274a7946035a
ufz
parents:
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8 ``` |
352e9d4eaf70
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit b9d952c8874f75f738ca4121d7e5274a7946035a
ufz
parents:
diff
changeset
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9 omero_account: |
352e9d4eaf70
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit b9d952c8874f75f738ca4121d7e5274a7946035a
ufz
parents:
diff
changeset
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10 description: Your OMERO instance connection credentials |
352e9d4eaf70
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit b9d952c8874f75f738ca4121d7e5274a7946035a
ufz
parents:
diff
changeset
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11 inputs: |
352e9d4eaf70
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit b9d952c8874f75f738ca4121d7e5274a7946035a
ufz
parents:
diff
changeset
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12 - name: username |
352e9d4eaf70
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit b9d952c8874f75f738ca4121d7e5274a7946035a
ufz
parents:
diff
changeset
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13 label: Username |
352e9d4eaf70
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit b9d952c8874f75f738ca4121d7e5274a7946035a
ufz
parents:
diff
changeset
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14 type: text |
352e9d4eaf70
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit b9d952c8874f75f738ca4121d7e5274a7946035a
ufz
parents:
diff
changeset
|
15 required: False |
352e9d4eaf70
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit b9d952c8874f75f738ca4121d7e5274a7946035a
ufz
parents:
diff
changeset
|
16 - name: password |
352e9d4eaf70
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit b9d952c8874f75f738ca4121d7e5274a7946035a
ufz
parents:
diff
changeset
|
17 label: Password |
352e9d4eaf70
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit b9d952c8874f75f738ca4121d7e5274a7946035a
ufz
parents:
diff
changeset
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18 type: password |
352e9d4eaf70
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit b9d952c8874f75f738ca4121d7e5274a7946035a
ufz
parents:
diff
changeset
|
19 required: False |