Mercurial > repos > ufz > omero_metadata_import

annotate README.md @ 3:eba4011643dd draft

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planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 19d84fd5a372f1428e3e5670144881a56e8af8b2
author ufz
date Tue, 22 Oct 2024 11:52:32 +0000
parents 352e9d4eaf70
children
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352e9d4eaf70 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit b9d952c8874f75f738ca4121d7e5274a7946035a
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1 # OMERO import images
352e9d4eaf70 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit b9d952c8874f75f738ca4121d7e5274a7946035a
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352e9d4eaf70 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit b9d952c8874f75f738ca4121d7e5274a7946035a
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3 ## Set up user credentials on Galaxy to connect to other omero instance
352e9d4eaf70 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit b9d952c8874f75f738ca4121d7e5274a7946035a
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352e9d4eaf70 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit b9d952c8874f75f738ca4121d7e5274a7946035a
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5 To enable users to set their credentials for this tool,
352e9d4eaf70 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit b9d952c8874f75f738ca4121d7e5274a7946035a
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6 make sure the file `config/user_preferences_extra.yml` has the following section:
352e9d4eaf70 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit b9d952c8874f75f738ca4121d7e5274a7946035a
ufz
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352e9d4eaf70 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit b9d952c8874f75f738ca4121d7e5274a7946035a
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8 ```
352e9d4eaf70 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit b9d952c8874f75f738ca4121d7e5274a7946035a
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9 omero_account:
352e9d4eaf70 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit b9d952c8874f75f738ca4121d7e5274a7946035a
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10 description: Your OMERO instance connection credentials
352e9d4eaf70 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit b9d952c8874f75f738ca4121d7e5274a7946035a
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11 inputs:
352e9d4eaf70 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit b9d952c8874f75f738ca4121d7e5274a7946035a
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12 - name: username
352e9d4eaf70 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit b9d952c8874f75f738ca4121d7e5274a7946035a
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13 label: Username
352e9d4eaf70 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit b9d952c8874f75f738ca4121d7e5274a7946035a
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14 type: text
352e9d4eaf70 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit b9d952c8874f75f738ca4121d7e5274a7946035a
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15 required: False
352e9d4eaf70 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit b9d952c8874f75f738ca4121d7e5274a7946035a
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16 - name: password
352e9d4eaf70 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit b9d952c8874f75f738ca4121d7e5274a7946035a
ufz
parents:
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17 label: Password
352e9d4eaf70 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit b9d952c8874f75f738ca4121d7e5274a7946035a
ufz
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18 type: password
352e9d4eaf70 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit b9d952c8874f75f738ca4121d7e5274a7946035a
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19 required: False