Mercurial > repos > ufz > omero_metadata_import

comparison omero_metadata_import.xml @ 6:6d8603230e85 draft default tip

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planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 3d98eedf798f0d1dcb32c572580c871ad2b6c9aa
author ufz
date Thu, 19 Dec 2024 13:48:21 +0000
parents 4291d37da555
children
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5:4291d37da555 6:6d8603230e85
33 <option value="plate">Plate</option> 33 <option value="plate">Plate</option>
34 <option value="well">Well</option> 34 <option value="well">Well</option>
35 <option value="image">Image</option> 35 <option value="image">Image</option>
36 </param> 36 </param>
37 <conditional name="object_id"> 37 <conditional name="object_id">
38 <param name="object_id_selection" type="select" label="Selection" help="Create a new OMERO object or target an existing one"> 38 <param name="object_id_selection" type="select" label="Selection" help="Create a new OMERO object or target an existing one">
39 <option value="new_object">Create new object</option> 39 <option value="new_object">Create new object</option>
40 <option value="existing_object">Target an existing object</option> 40 <option value="existing_object">Target an existing object</option>
41 </param> 41 </param>
42 <when value="new_object"/> 42 <when value="new_object"/>
43 <when value="existing_object"> 43 <when value="existing_object">
44 <param name="did" type="integer" min = "1" optional="false" label="Object ID"/> 44 <param name="did" type="integer" min = "1" optional="false" label="Object ID"/>
45 </when> 45 </when>
46 </conditional> 46 </conditional>
47 <param argument="ann_type" type="select" optional="false" label="Annotation type" help="Select annotation format"> 47 <param argument="ann_type" type="select" optional="false" label="Annotation type" help="Select annotation format">
48 <option value="table">Table</option> 48 <option value="table">Table</option>
49 <option value="KV">Key-Value Pairs</option> 49 <option value="KV">Key-Value Pairs</option>
50 </param> 50 </param>
58 <test> 58 <test>
59 <param name="omero_host" value="host.docker.internal"/> 59 <param name="omero_host" value="host.docker.internal"/>
60 <param name="omero_port" value="6064"/> 60 <param name="omero_port" value="6064"/>
61 <param name="obj_type" value="project"/> 61 <param name="obj_type" value="project"/>
62 <param name="ann_type" value="table"/> 62 <param name="ann_type" value="table"/>
63 <param name="object_id_selection" value="new_object"/> 63 <conditional name="object_id">
64 <param name="object_id_selection" value="new_object"/>
65 </conditional>
64 <param name="ann_file" value="metadata.tsv"/> 66 <param name="ann_file" value="metadata.tsv"/>
65 <param name="an_name" value="Table_Test"/> 67 <param name="an_name" value="Table_Test"/>
66 <param name="test_username" value="root"/> 68 <param name="test_username" value="root"/>
67 <param name="test_password" value="omero"/> 69 <param name="test_password" value="omero"/>
68 <output name="log" value="output_table_import.txt" ftype="txt"> 70 <output name="log" value="output_table_import.txt" ftype="txt">
74 <test> 76 <test>
75 <param name="omero_host" value="host.docker.internal"/> 77 <param name="omero_host" value="host.docker.internal"/>
76 <param name="omero_port" value="6064"/> 78 <param name="omero_port" value="6064"/>
77 <param name="obj_type" value="dataset"/> 79 <param name="obj_type" value="dataset"/>
78 <param name="ann_type" value="KV"/> 80 <param name="ann_type" value="KV"/>
79 <param name="object_id_selection" value="new_object"/> 81 <conditional name="object_id">
82 <param name="object_id_selection" value="new_object"/>
83 </conditional>
80 <param name="ann_file" value="metadata.tsv"/> 84 <param name="ann_file" value="metadata.tsv"/>
81 <param name="an_name" value="KV_Test"/> 85 <param name="an_name" value="KV_Test"/>
82 <param name="test_username" value="root"/> 86 <param name="test_username" value="root"/>
83 <param name="test_password" value="omero"/> 87 <param name="test_password" value="omero"/>
84 <output name="log" value="output_KV_import.txt" ftype="txt"> 88 <output name="log" value="output_KV_import.txt" ftype="txt">
90 <test> 94 <test>
91 <param name="omero_host" value="host.docker.internal"/> 95 <param name="omero_host" value="host.docker.internal"/>
92 <param name="omero_port" value="6064"/> 96 <param name="omero_port" value="6064"/>
93 <param name="obj_type" value="dataset"/> 97 <param name="obj_type" value="dataset"/>
94 <param name="ann_type" value="KV"/> 98 <param name="ann_type" value="KV"/>
95 <param name="object_id_selection" value="existing_object"/> 99 <conditional name="object_id">
96 <param name="did" value="1"/> 100 <param name="object_id_selection" value="existing_object"/>
101 <param name="did" value="1"/>
102 </conditional>
97 <param name="ann_file" value="metadata.tsv"/> 103 <param name="ann_file" value="metadata.tsv"/>
98 <param name="an_name" value="Additional_KV_Values"/> 104 <param name="an_name" value="Additional_KV_Values"/>
99 <param name="test_username" value="root"/> 105 <param name="test_username" value="root"/>
100 <param name="test_password" value="omero"/> 106 <param name="test_password" value="omero"/>
101 <output name="log" value="output_target_import.txt" ftype="txt"> 107 <output name="log" value="output_target_import.txt" ftype="txt">