Mercurial > repos > ufz > omero_roi_import

annotate README.md @ 5:55e3d33cf4bd draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 636cbb62d59819caca5bc9eab0a8ec31be5bdd46
author ufz
date Mon, 16 Dec 2024 20:56:29 +0000
parents 9051b91545f6
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
9051b91545f6 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 5b1b30d409355cee98485815c1dd4ac48649bcc1
ufz
parents:
diff changeset
1 # OMERO import images
9051b91545f6 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 5b1b30d409355cee98485815c1dd4ac48649bcc1
ufz
parents:
diff changeset
2
9051b91545f6 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 5b1b30d409355cee98485815c1dd4ac48649bcc1
ufz
parents:
diff changeset
3 ## Set up user credentials on Galaxy to connect to other omero instance
9051b91545f6 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 5b1b30d409355cee98485815c1dd4ac48649bcc1
ufz
parents:
diff changeset
4
9051b91545f6 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 5b1b30d409355cee98485815c1dd4ac48649bcc1
ufz
parents:
diff changeset
5 To enable users to set their credentials for this tool,
9051b91545f6 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 5b1b30d409355cee98485815c1dd4ac48649bcc1
ufz
parents:
diff changeset
6 make sure the file `config/user_preferences_extra.yml` has the following section:
9051b91545f6 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 5b1b30d409355cee98485815c1dd4ac48649bcc1
ufz
parents:
diff changeset
7
9051b91545f6 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 5b1b30d409355cee98485815c1dd4ac48649bcc1
ufz
parents:
diff changeset
8 ```
9051b91545f6 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 5b1b30d409355cee98485815c1dd4ac48649bcc1
ufz
parents:
diff changeset
9 omero_account:
9051b91545f6 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 5b1b30d409355cee98485815c1dd4ac48649bcc1
ufz
parents:
diff changeset
10 description: Your OMERO instance connection credentials
9051b91545f6 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 5b1b30d409355cee98485815c1dd4ac48649bcc1
ufz
parents:
diff changeset
11 inputs:
9051b91545f6 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 5b1b30d409355cee98485815c1dd4ac48649bcc1
ufz
parents:
diff changeset
12 - name: username
9051b91545f6 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 5b1b30d409355cee98485815c1dd4ac48649bcc1
ufz
parents:
diff changeset
13 label: Username
9051b91545f6 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 5b1b30d409355cee98485815c1dd4ac48649bcc1
ufz
parents:
diff changeset
14 type: text
9051b91545f6 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 5b1b30d409355cee98485815c1dd4ac48649bcc1
ufz
parents:
diff changeset
15 required: False
9051b91545f6 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 5b1b30d409355cee98485815c1dd4ac48649bcc1
ufz
parents:
diff changeset
16 - name: password
9051b91545f6 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 5b1b30d409355cee98485815c1dd4ac48649bcc1
ufz
parents:
diff changeset
17 label: Password
9051b91545f6 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 5b1b30d409355cee98485815c1dd4ac48649bcc1
ufz
parents:
diff changeset
18 type: password
9051b91545f6 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 5b1b30d409355cee98485815c1dd4ac48649bcc1
ufz
parents:
diff changeset
19 required: False