comparison data_manager/phabox_datamanager.xml @ 1:334bd61d216d draft

planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_phabox commit c78bd5eafa3d9450305cc8b32ba9cf8c64c42ba7

0:6521d8d6dbdf

<tool id="phabox_build_database" name="PhaBOX" tool_type="manage_data" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
    <description>database builder</description>
    <macros>
        <token name="@TOOL_VERSION@">2.1.5</token>
        <token name="@DB_VERSION@">2</token>
        <token name="@VERSION_SUFFIX@">0</token>
        <token name="@PROFILE@">22.01</token>
    </macros>
    <requirements>
        <requirement type="package" version="6.0">unzip</requirement>
        <requirement type="package" version="1.21.4">wget</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
        wget https://github.com/KennthShang/PhaBOX/releases/download/v2/phabox_db_v@DB_VERSION@.zip &&
        unzip phabox_db_v@DB_VERSION@.zip &&
        cp '$dmjson' '$out_file'
    ]]></command>
    <configfiles>
        <configfile name="dmjson"><![CDATA[
{

1:334bd61d216d

<tool id="phabox_build_database" name="PhaBOX" tool_type="manage_data" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
    <description>database builder</description>
    <macros>
        <token name="@TOOL_VERSION@">2.1.5</token>
        <token name="@DB_VERSION@">2</token>
        <token name="@VERSION_SUFFIX@">1</token>
        <token name="@PROFILE@">22.01</token>
    </macros>
    <requirements>
        <requirement type="package" version="6.0">unzip</requirement>
        <requirement type="package" version="1.21.4">wget</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
        wget https://github.com/KennthShang/PhaBOX/releases/download/v2/phabox_db_v@DB_VERSION@.zip &&
        unzip phabox_db_v@DB_VERSION@.zip &&
        mkdir -p '$out_file.extra_files_path' &&
        mv "phabox_db_v@DB_VERSION@" '$out_file.extra_files_path' &&
        cp '$dmjson' '$out_file'
    ]]></command>
    <configfiles>
        <configfile name="dmjson"><![CDATA[
{