Mercurial > repos > ufz > phabox_contamination
comparison contamination.xml @ 1:94390e0d6791 draft default tip
planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/tools/phabox commit 52385539f64c4e46c2e8953588efa3ea01bb99fd
| author | ufz |
|---|---|
| date | Wed, 16 Apr 2025 09:43:47 +0000 |
| parents | 3f73568fafdc |
| children |
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| 0:3f73568fafdc | 1:94390e0d6791 |
|---|---|
| 22 <data name="out" format="tabular" from_work_dir="output/final_prediction/contamination_prediction.tsv"/> | 22 <data name="out" format="tabular" from_work_dir="output/final_prediction/contamination_prediction.tsv"/> |
| 23 </outputs> | 23 </outputs> |
| 24 <tests> | 24 <tests> |
| 25 <test> | 25 <test> |
| 26 <param name="dbdir" value="phaboxdb"/> | 26 <param name="dbdir" value="phaboxdb"/> |
| 27 <param name="contigs" value="example_contigs.fa"/> | 27 <param name="contigs" value="example_contigs.fa" location="https://github.com/KennthShang/PhaBOX/releases/download/v2/example_contigs.fa"/> |
| 28 <output name="out"> | 28 <output name="out"> |
| 29 <assert_contents> | 29 <assert_contents> |
| 30 <has_line line="Accession	Length	Total_genes	Viral_genes	Prokaryotic_genes	Kmer_freq	Contamination	Provirus	Pure_viral"/> | 30 <has_line line="Accession	Length	Total_genes	Viral_genes	Prokaryotic_genes	Kmer_freq	Contamination	Provirus	Pure_viral"/> |
| 31 <has_n_lines n="11"/> | 31 <has_n_lines n="391"/> |
| 32 <has_n_columns n="9"/> | 32 <has_n_columns n="9"/> |
| 33 </assert_contents> | 33 </assert_contents> |
| 34 </output> | 34 </output> |
| 35 </test> | 35 </test> |
| 36 </tests> | 36 </tests> |