Mercurial > repos > ufz > phabox_phavip

diff phavip.xml @ 1:4844d9472fa6 draft default tip

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planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/tools/phabox commit 52385539f64c4e46c2e8953588efa3ea01bb99fd
author ufz
date Wed, 16 Apr 2025 09:43:30 +0000
parents f5dba8d92cf0
children
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line diff
--- a/phavip.xml	Tue Nov 12 09:32:52 2024 +0000
+++ b/phavip.xml	Wed Apr 16 09:43:30 2025 +0000
@@ -28,30 +28,30 @@
     <tests>
         <test expect_num_outputs="1">
             <param name="dbdir" value="phaboxdb"/>
-            <param name="contigs" value="example_contigs.fa"/>
+            <param name="contigs" value="example_contigs.fa" location="https://github.com/KennthShang/PhaBOX/releases/download/v2/example_contigs.fa"/>
             <output name="out">
                 <assert_contents>
                     <has_line line="Accession&#9;Length&#9;Protein_num&#9;Annotated_num&#9;Annotation_rate"/>
-                    <has_n_lines n="11"/>
+                    <has_n_lines n="391"/>
                     <has_n_columns n="5"/>
                 </assert_contents>
             </output>
         </test>
         <test expect_num_outputs="2">
             <param name="dbdir" value="phaboxdb"/>
-            <param name="contigs" value="example_contigs.fa"/>
+            <param name="contigs" value="example_contigs.fa" location="https://github.com/KennthShang/PhaBOX/releases/download/v2/example_contigs.fa"/>
             <param name="supp_outputs" value="gene_annotation"/>
             <output name="out">
                 <assert_contents>
                     <has_line line="Accession&#9;Length&#9;Protein_num&#9;Annotated_num&#9;Annotation_rate"/>
-                    <has_n_lines n="11"/>
+                    <has_n_lines n="391"/>
                     <has_n_columns n="5"/>
                 </assert_contents>
             </output>
             <output name="phavip_annotation">
                 <assert_contents>
                     <has_line line="Genome&#9;ORF&#9;Start&#9;End&#9;Strand&#9;GC&#9;Annotation&#9;pident&#9;coverage"/>
-                    <has_n_lines n="171"/>
+                    <has_n_lines n="8995"/>
                     <has_n_columns n="9"/>
                 </assert_contents>
             </output>