Mercurial > repos > ufz > phi_toolkit_report

diff test-data/checkv_quality_summary/NC_017033.fasta.tabular @ 0:315c2ed31af1 draft

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planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/tools/phi-toolkit commit 45c746567f48e6c9bcc19ba4e94e87348df3ac7a
author ufz
date Wed, 04 Jun 2025 17:36:40 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/checkv_quality_summary/NC_017033.fasta.tabular	Wed Jun 04 17:36:40 2025 +0000
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+contig_id	contig_length	provirus	proviral_length	gene_count	viral_genes	host_genes	checkv_quality	miuvig_quality	completeness	completeness_method	contamination	kmer_freq	warnings
+NC_017033.1|provirus_1052334_1094910	42577	No	NA	66	28	3	High-quality	High-quality	100.0	AAI-based (medium-confidence)	0.0	1.0	
+NC_017033.1|provirus_1557694_1600481	42788	No	NA	71	28	0	Medium-quality	Genome-fragment	89.2	AAI-based (medium-confidence)	0.0	1.01	
+NC_017033.1|provirus_2089294_2107522	18229	No	NA	25	3	0	Low-quality	Genome-fragment	29.18	HMM-based (lower-bound)	0.0	1.0