Mercurial > repos > ufz > phi_toolkit_report
diff test-data/defense_finder_systems/NC_019897.fasta.tabular @ 0:315c2ed31af1 draft
planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/tools/phi-toolkit commit 45c746567f48e6c9bcc19ba4e94e87348df3ac7a
| author | ufz |
|---|---|
| date | Wed, 04 Jun 2025 17:36:40 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/defense_finder_systems/NC_019897.fasta.tabular Wed Jun 04 17:36:40 2025 +0000 @@ -0,0 +1,13 @@ +sys_id type subtype activity sys_beg sys_end protein_in_syst genes_count name_of_profiles_in_sys +NC_019897.1_RM_Type_III_11 RM RM_Type_III Defense NC_019897.1_86 NC_019897.1_87 NC_019897.1_86,NC_019897.1_87 2 RM_Type_III__Type_III_MTases_FAM_0,RM_Type_III__Type_III_REases_FAM_0.einsi_trimmed +NC_019897.1_MazEF_3 MazEF MazEF Defense NC_019897.1_128 NC_019897.1_129 NC_019897.1_128,NC_019897.1_129 2 MazEF__MazE,MazEF__MazF +NC_019897.1_RM_Type_II_9 RM RM_Type_II Defense NC_019897.1_789 NC_019897.1_790 NC_019897.1_789,NC_019897.1_790 2 RM_Type_II__Type_II_MTases_FAM_2,RM_Type_II__Type_II_REase27 +NC_019897.1_Mokosh_TypeII_4 Mokosh Mokosh_TypeII Defense NC_019897.1_913 NC_019897.1_913 NC_019897.1_913 1 Mokosh_TypeII__MkoC +NC_019897.1_Druantia_I_2 Druantia Druantia_I Defense NC_019897.1_2741 NC_019897.1_2744 NC_019897.1_2741,NC_019897.1_2742,NC_019897.1_2743,NC_019897.1_2744 4 Druantia_I__DruB,Druantia_I__DruC,Druantia_I__DruD,Druantia__DruE_1 +NC_019897.1_CAS_Class1-Subtype-III-D_14 Cas CAS_Class1-Subtype-III-D Defense NC_019897.1_3030 NC_019897.1_3035 NC_019897.1_3030,NC_019897.1_3031,NC_019897.1_3032,NC_019897.1_3033,NC_019897.1_3034,NC_019897.1_3035 6 cas10_III-D_3,csm3gr7_III-D_2,csm3gr7_III-D_3,csm3gr7_III_1,csx19_III-D_17,csx1_III_11 +NC_019897.1_CAS_Class1-Subtype-I-B_12 Cas CAS_Class1-Subtype-I-B Defense NC_019897.1_3046 NC_019897.1_3053 NC_019897.1_3046,NC_019897.1_3047,NC_019897.1_3048,NC_019897.1_3049,NC_019897.1_3050,NC_019897.1_3051,NC_019897.1_3052,NC_019897.1_3053 8 cas1_I_II_III_IV_V_VI_7,cas2_I_II_III_IV_V_VI_3,cas3_I_2,cas4_I_II_III_IV_V_VI_6,cas5_I-B_17,cas6_I_II_III_IV_V_VI_20,cas7b_I-B_I-C_2,cas8b1_I-B_8 +NC_019897.1_CAS_Class1-Subtype-I-C_13 Cas CAS_Class1-Subtype-I-C Defense NC_019897.1_3155 NC_019897.1_3158 NC_019897.1_3155,NC_019897.1_3156,NC_019897.1_3157,NC_019897.1_3158 4 cas3_I_5,cas5_I-C_5,cas7_I-C_7,cas8c_I-C_4 +NC_019897.1_Wadjet_II_6 Wadjet Wadjet_II Defense NC_019897.1_3286 NC_019897.1_3289 NC_019897.1_3286,NC_019897.1_3287,NC_019897.1_3288,NC_019897.1_3289 4 Wadjet__JetA_II,Wadjet__JetB_II,Wadjet__JetC_II,Wadjet__JetD_II +NC_019897.1_RM_Type_I_8 RM RM_Type_I Defense NC_019897.1_3326 NC_019897.1_3328 NC_019897.1_3326,NC_019897.1_3327,NC_019897.1_3328 3 RM__Type_I_MTases_FAM_1,RM__Type_I_REases_FAM_2.einsi_trimmed,RM__Type_I_S_51 +NC_019897.1_RM_Type_II_10 RM RM_Type_II Defense NC_019897.1_3527 NC_019897.1_3528 NC_019897.1_3527,NC_019897.1_3528 2 RM_Type_II__Type_II_MTases_FAM_16,RM_Type_II__Type_II_REase01 +NC_019897.1_Ceres_1 Ceres Ceres Defense NC_019897.1_3704 NC_019897.1_3704 NC_019897.1_3704 1 Ceres__CrsA1