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view test-data/genomad_virus_genes/NC_014168.fasta.tabular @ 1:3a7f73d638ba draft default tip
planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/tools/phi-toolkit commit 368e8a7322c9763c648637263d4695abc146be13
| author | ufz |
|---|---|
| date | Tue, 22 Jul 2025 11:09:24 +0000 |
| parents | 315c2ed31af1 |
| children |
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gene start end length strand gc_content genetic_code rbs_motif marker evalue bitscore uscg plasmid_hallmark virus_hallmark taxid taxname annotation_conjscan annotation_amr annotation_accessions annotation_description NC_014168.1|provirus_27479_67296_28 27479 28375 897 1 0.672 11 GGAGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_27479_67296_29 28372 28920 549 1 0.667 11 AGGAG NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_27479_67296_30 28917 29114 198 1 0.712 11 GGAG/GAGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_27479_67296_31 29111 29863 753 1 0.671 11 GGAG/GAGG GENOMAD.032144.VV 1.48e-35 138 0 0 0 2561 Caudoviricetes NA NA PF12684 NA NC_014168.1|provirus_27479_67296_32 29860 30516 657 1 0.658 11 GGA/GAG/AGG GENOMAD.124252.VP 2.931e-32 127 0 0 0 2561 Caudoviricetes NA NA PF03837;TIGR01913 phage recombination protein Bet NC_014168.1|provirus_27479_67296_33 30516 30917 402 1 0.649 11 GGAG/GAGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_27479_67296_34 30923 31276 354 1 0.638 11 GGxGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_27479_67296_35 31280 31432 153 1 0.660 11 GGAGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_27479_67296_36 31426 31845 420 1 0.662 11 GGAGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_27479_67296_37 31842 32357 516 1 0.698 11 GGAG/GAGG GENOMAD.033304.VV 2.452e-10 61 0 0 0 2561 Caudoviricetes NA NA PF13395 NA NC_014168.1|provirus_27479_67296_38 32357 33292 936 1 0.661 11 GGxGG GENOMAD.028141.VV 1.19e-25 111 0 0 1 2561 Caudoviricetes NA NA PF09681;TIGR01714 N-terminal phage replisome organiser (Phage_rep_org_N) NC_014168.1|provirus_27479_67296_39 33289 33654 366 1 0.658 11 GGAGG GENOMAD.087217.VV 8.175e-05 43 0 0 0 2561 Caudoviricetes NA NA NA NA NC_014168.1|provirus_27479_67296_40 33651 34037 387 1 0.674 11 AGGAG GENOMAD.018151.VV 4.881e-23 96 0 0 0 2561 Caudoviricetes NA NA PF01870;COG1591 Holliday junction resolvase, archaeal type NC_014168.1|provirus_27479_67296_41 34034 34234 201 1 0.672 11 AGGA NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_27479_67296_42 34231 34542 312 1 0.670 11 GGAGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_27479_67296_43 34539 34751 213 1 0.596 11 AGGAG NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_27479_67296_44 34748 34984 237 1 0.578 11 GGA/GAG/AGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_27479_67296_45 35011 35331 321 1 0.617 11 AGGAG NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_27479_67296_46 35328 35798 471 1 0.620 11 GGAGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_27479_67296_47 35795 36223 429 1 0.653 11 AGGAG NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_27479_67296_48 36220 36798 579 1 0.585 11 AGxAGG/AGGxGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_27479_67296_49 36795 37106 312 1 0.647 11 GGA/GAG/AGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_27479_67296_50 37103 37882 780 1 0.663 11 AGGAG NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_27479_67296_51 37879 38100 222 1 0.676 11 AGGA NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_27479_67296_52 38249 40009 1761 1 0.681 11 GGAG/GAGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_27479_67296_53 40017 40673 657 1 0.636 11 AGGA/GGAG/GAGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_27479_67296_54 40670 40990 321 1 0.632 11 AGGAG NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_27479_67296_55 41205 41459 255 1 0.663 11 GGAGG GENOMAD.083226.VV 1.61e-08 52 0 0 0 2561 Caudoviricetes NA NA NA NA NC_014168.1|provirus_27479_67296_56 41512 41895 384 1 0.620 11 AGGA NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_27479_67296_57 41892 42371 480 1 0.640 11 GGxGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_27479_67296_58 42274 42642 369 -1 0.672 11 AGGAG GENOMAD.215374.PC 1.387e-08 54 0 0 0 1 NA NA NA PF13827 NA NC_014168.1|provirus_27479_67296_59 42807 43085 279 1 0.674 11 AGGAG GENOMAD.014408.VV 1.177e-14 70 0 0 0 2561 Caudoviricetes NA NA PF13395;TIGR02646 HNH endonuclease NC_014168.1|provirus_27479_67296_60 43082 43267 186 1 0.602 11 GGA/GAG/AGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_27479_67296_61 43504 43767 264 1 0.655 11 AGGAG GENOMAD.047538.VV 9.427e-15 70 0 0 0 2561 Caudoviricetes NA NA NA NA NC_014168.1|provirus_27479_67296_62 43751 45166 1416 1 0.663 11 AGGAG/GGAGG GENOMAD.002060.VV 1.733e-134 436 0 0 1 2561 Caudoviricetes NA NA PF20441;PF04466;COG4626;TIGR01547;K06909 Phage terminase-like protein, large subunit, contains N-terminal HTH domain NC_014168.1|provirus_27479_67296_63 45190 46566 1377 1 0.687 11 GGAGG GENOMAD.080886.VV 1.496e-47 181 0 0 1 2561 Caudoviricetes NA NA PF05133;TIGR01538 phage portal protein, SPP1 family NC_014168.1|provirus_27479_67296_64 46550 47233 684 1 0.697 11 GGAG/GAGG GENOMAD.097054.VV 4.565e-30 121 0 0 1 2561 Caudoviricetes NA NA PF04233;TIGR01641 phage putative head morphogenesis protein, SPP1 gp7 family NC_014168.1|provirus_27479_67296_65 47285 47761 477 1 0.644 11 GGA/GAG/AGG GENOMAD.040462.VV 2.062e-54 188 0 0 0 2561 Caudoviricetes NA NA NA NA NC_014168.1|provirus_27479_67296_66 47788 48696 909 1 0.636 11 GGAG/GAGG GENOMAD.013023.VV 2.718e-53 192 0 0 1 2561 Caudoviricetes NA NA PF05065;TIGR01554;COG4653 phage major capsid protein, HK97 family NC_014168.1|provirus_27479_67296_67 48696 48869 174 1 0.724 11 AGGA/GGAG/GAGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_27479_67296_68 48841 49308 468 1 0.686 11 GGAG/GAGG GENOMAD.062537.VV 2.534e-42 153 0 0 1 2561 Caudoviricetes NA NA PF09355 Phage protein Gp19/Gp15/Gp42 NC_014168.1|provirus_27479_67296_69 49305 49646 342 1 0.702 11 None GENOMAD.038727.VV 1.417e-21 91 0 0 1 2561 Caudoviricetes NA NA PF12206;COG5614;TIGR01563 Minor capsid protein NC_014168.1|provirus_27479_67296_70 49647 49955 309 1 0.673 11 GGAGG GENOMAD.087122.VV 2.723e-10 58 0 0 0 2561 Caudoviricetes NA NA NA NA NC_014168.1|provirus_27479_67296_71 49959 50357 399 1 0.714 11 GGA/GAG/AGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_27479_67296_72 50395 51042 648 1 0.657 11 AGGA GENOMAD.004252.VV 6.372e-16 79 0 0 0 2561 Caudoviricetes NA NA NA NA NC_014168.1|provirus_27479_67296_73 51039 51371 333 1 0.658 11 GGA/GAG/AGG GENOMAD.187636.VV 2.624e-05 44 0 0 0 2561 Caudoviricetes NA NA NA NA NC_014168.1|provirus_27479_67296_74 51380 51763 384 1 0.693 11 3Base/5BMM GENOMAD.056037.VV 4.163e-06 47 0 0 0 2561 Caudoviricetes NA NA PF17318;PF08765;TIGR02417 Mor transcription activator family NC_014168.1|provirus_27479_67296_75 51744 55466 3723 1 0.706 11 AGGAG GENOMAD.016295.VV 2.211e-48 193 0 0 0 2561 Caudoviricetes NA NA COG3953 SLT domain protein NC_014168.1|provirus_27479_67296_76 55466 56728 1263 1 0.678 11 GGAGG GENOMAD.053786.VV 4.118e-58 211 0 0 0 2561 Caudoviricetes NA NA COG4722 Phage-related protein NC_014168.1|provirus_27479_67296_77 56728 58500 1773 1 0.679 11 GGA/GAG/AGG GENOMAD.019112.VV 3.356e-155 502 0 0 0 2561 Caudoviricetes NA NA NA NA NC_014168.1|provirus_27479_67296_78 58500 58751 252 1 0.675 11 GGA/GAG/AGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_27479_67296_79 58751 59812 1062 1 0.658 11 GGAGG GENOMAD.059914.VV 2.914e-67 235 0 0 0 2561 Caudoviricetes NA NA NA NA NC_014168.1|provirus_27479_67296_80 59814 61079 1266 1 0.682 11 None GENOMAD.079434.VV 5.593e-20 96 0 0 0 2561 Caudoviricetes NA NA NA NA NC_014168.1|provirus_27479_67296_81 61144 62403 1260 1 0.683 11 AGGAG GENOMAD.047467.VV 2.371e-19 94 0 0 0 2561 Caudoviricetes NA NA COG5632 N-acetylmuramoyl-L-alanine amidase CwlA NC_014168.1|provirus_27479_67296_82 62400 62756 357 1 0.669 11 AGGA NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_27479_67296_83 62756 63031 276 1 0.656 11 GGA/GAG/AGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_27479_67296_84 63031 63237 207 1 0.705 11 GGxGG GENOMAD.158505.VV 1.14e-05 43 0 0 0 2561 Caudoviricetes NA NA NA NA NC_014168.1|provirus_27479_67296_85 63230 63589 360 1 0.689 11 AGGAG GENOMAD.073706.VV 2.772e-08 53 0 0 0 2561 Caudoviricetes NA NA NA NA NC_014168.1|provirus_27479_67296_86 63716 64087 372 -1 0.570 11 GGA/GAG/AGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_27479_67296_87 64298 64633 336 -1 0.560 11 None NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_27479_67296_88 64630 64902 273 -1 0.615 11 GGAG/GAGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_27479_67296_89 64902 66164 1263 -1 0.621 11 GGA/GAG/AGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_27479_67296_90 66247 67296 1050 -1 0.604 11 AGGA NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_1141631_1162952_1152 1141631 1141948 318 -1 0.736 11 GGAG/GAGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_1141631_1162952_1153 1142010 1142369 360 -1 0.742 11 GGA/GAG/AGG GENOMAD.082050.VV 3.69e-22 93 0 0 0 2561 Caudoviricetes NA NA NA NA NC_014168.1|provirus_1141631_1162952_1154 1142366 1142698 333 -1 0.685 11 GGA/GAG/AGG GENOMAD.076859.VV 2.776e-13 67 0 0 0 2561 Caudoviricetes NA NA NA NA NC_014168.1|provirus_1141631_1162952_1155 1142709 1143020 312 -1 0.740 11 AGGAGG GENOMAD.103239.VV 2.089e-13 67 0 0 1 2561 Caudoviricetes NA NA PF10665;TIGR01563;COG5614 Minor capsid protein NC_014168.1|provirus_1141631_1162952_1156 1143056 1143292 237 1 0.633 11 None NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_1141631_1162952_1157 1143298 1143807 510 -1 0.716 11 GGAG/GAGG GENOMAD.028700.VV 2.384e-22 96 0 0 0 2561 Caudoviricetes NA NA TIGR02215 phage conserved hypothetical protein, phiE125 gp8 family NC_014168.1|provirus_1141631_1162952_1158 1143813 1144004 192 -1 0.609 11 GGA/GAG/AGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_1141631_1162952_1159 1144022 1145302 1281 -1 0.680 11 AGGAG GENOMAD.098207.VP 2.112e-87 297 0 0 1 2561 Caudoviricetes NA NA PF06673;TIGR01554;COG1659 Lactococcus lactis bacteriophage major capsid protein NC_014168.1|provirus_1141631_1162952_1160 1145299 1145991 693 -1 0.700 11 AGGAG GENOMAD.207278.VV 3.963e-19 89 0 0 1 2561 Caudoviricetes NA NA PF04586;COG3740;K06904;TIGR01543 Phage head maturation protease NC_014168.1|provirus_1141631_1162952_1161 1145948 1147249 1302 -1 0.707 11 GGAG/GAGG GENOMAD.138175.VV 2.9e-86 294 0 0 1 2561 Caudoviricetes NA NA PF04860;TIGR01537;COG4695 phage portal protein, HK97 family NC_014168.1|provirus_1141631_1162952_1162 1147274 1148770 1497 -1 0.707 11 GGAGG GENOMAD.037086.VV 2.935e-120 396 0 0 1 2561 Caudoviricetes NA NA PF20441;PF03354;COG4626;TIGR01547 Phage terminase-like protein, large subunit, contains N-terminal HTH domain NC_014168.1|provirus_1141631_1162952_1163 1148787 1149077 291 -1 0.735 11 GGAG/GAGG GENOMAD.064187.VV 3.239e-06 46 0 0 1 2561 Caudoviricetes NA NA TIGR01558 NA NC_014168.1|provirus_1141631_1162952_1164 1149335 1149841 507 1 0.677 11 AGGAG NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_1141631_1162952_1165 1150029 1150580 552 1 0.661 11 AGGAG NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_1141631_1162952_1166 1150720 1151001 282 -1 0.645 11 AGGA NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_1141631_1162952_1167 1151045 1151320 276 -1 0.703 11 None GENOMAD.041582.VV 4.527e-16 74 0 0 0 2561 Caudoviricetes NA NA PF13395;TIGR02646 TIGR02646 family protein NC_014168.1|provirus_1141631_1162952_1168 1151326 1152444 1119 -1 0.718 11 GGAGG GENOMAD.064801.VV 2.016e-15 81 0 0 0 2561 Caudoviricetes NA NA PF00145;TIGR00675;COG0270;K15336 DNA-methyltransferase (dcm) NC_014168.1|provirus_1141631_1162952_1169 1152853 1153509 657 -1 0.702 11 AGGAG GENOMAD.066690.VV 1.852e-101 327 0 0 0 2561 Caudoviricetes NA NA PF10122;COG5349;TIGR01206 Uncharacterized conserved protein, DUF983 family NC_014168.1|provirus_1141631_1162952_1170 1153506 1153754 249 -1 0.683 11 AGGAG NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_1141631_1162952_1171 1153751 1154008 258 -1 0.698 11 AGGAG NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_1141631_1162952_1172 1154012 1154389 378 -1 0.675 11 GGAG/GAGG GENOMAD.063447.VV 9.173e-15 72 0 0 0 2561 Caudoviricetes NA NA PF11417 NA NC_014168.1|provirus_1141631_1162952_1173 1154389 1155183 795 -1 0.659 11 AGGAG GENOMAD.049678.VV 1.151e-06 52 0 0 1 2561 Caudoviricetes NA NA PF09681;TIGR01714 phage replisome organizer, putative, N-terminal region NC_014168.1|provirus_1141631_1162952_1174 1155187 1155612 426 -1 0.732 11 GGAGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_1141631_1162952_1175 1155609 1155995 387 -1 0.700 11 GGAG/GAGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_1141631_1162952_1176 1156014 1156796 783 -1 0.706 11 GGAGG GENOMAD.021092.VV 7.29e-40 151 0 0 0 2561 Caudoviricetes NA NA PF12684;TIGR00372;COG1468;K07465 CRISPR-associated protein Cas4 NC_014168.1|provirus_1141631_1162952_1177 1156793 1157083 291 -1 0.698 11 AGGAG NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_1141631_1162952_1178 1157080 1157307 228 -1 0.693 11 GGxGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_1141631_1162952_1179 1157304 1157678 375 -1 0.739 11 GGAG/GAGG GENOMAD.067886.VV 1.484e-08 54 0 0 0 2561 Caudoviricetes NA NA NA NA NC_014168.1|provirus_1141631_1162952_1180 1157757 1158599 843 -1 0.706 11 AGGA GENOMAD.161352.VP 5.904e-23 102 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_1141631_1162952_1181 1158605 1159525 921 -1 0.701 11 GGAG/GAGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_1141631_1162952_1182 1159522 1159776 255 -1 0.729 11 GGA/GAG/AGG GENOMAD.222641.VP 1.01e-05 44 0 0 0 1 NA NA NA PF08667;COG5606;TIGR02612;K07727 Predicted DNA-binding protein, XRE-type HTH domain NC_014168.1|provirus_1141631_1162952_1183 1159861 1160289 429 1 0.713 11 None NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_1141631_1162952_1184 1160403 1161263 861 1 0.700 11 None NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_1141631_1162952_1185 1161230 1161493 264 1 0.746 11 AGGAG NA NA NA 0 0 0 1 NA NA NA NA NA NC_014168.1|provirus_1141631_1162952_1186 1161597 1162952 1356 1 0.684 11 AGGAG NA NA NA 0 0 0 1 NA NA NA NA NA